PP379_ARATH
ID PP379_ARATH Reviewed; 609 AA.
AC Q66GP4; Q9FKI5;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 11-OCT-2004, sequence version 1.
DT 25-MAY-2022, entry version 105.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g13770, chloroplastic;
DE Flags: Precursor;
GN OrderedLocusNames=At5g13770; ORFNames=MXE10.6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9679202; DOI=10.1093/dnares/5.2.131;
RA Kaneko T., Kotani H., Nakamura Y., Sato S., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence
RT features of the regions of 1,381,565 bp covered by twenty one physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:131-145(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB10598.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB011484; BAB10598.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002688; AED91939.1; -; Genomic_DNA.
DR EMBL; BT015358; AAU05481.1; -; mRNA.
DR EMBL; BT015886; AAU95422.1; -; mRNA.
DR RefSeq; NP_196881.2; NM_121380.3.
DR AlphaFoldDB; Q66GP4; -.
DR SMR; Q66GP4; -.
DR BioGRID; 16500; 1.
DR STRING; 3702.AT5G13770.1; -.
DR PaxDb; Q66GP4; -.
DR PRIDE; Q66GP4; -.
DR ProteomicsDB; 249263; -.
DR EnsemblPlants; AT5G13770.1; AT5G13770.1; AT5G13770.
DR GeneID; 831222; -.
DR Gramene; AT5G13770.1; AT5G13770.1; AT5G13770.
DR KEGG; ath:AT5G13770; -.
DR Araport; AT5G13770; -.
DR TAIR; locus:2177115; AT5G13770.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_031331_0_0_1; -.
DR InParanoid; Q66GP4; -.
DR OMA; HMYSSTV; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q66GP4; -.
DR PRO; PR:Q66GP4; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q66GP4; baseline and differential.
DR Genevisible; Q66GP4; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0009658; P:chloroplast organization; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..44
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 45..609
FT /note="Pentatricopeptide repeat-containing protein
FT At5g13770, chloroplastic"
FT /id="PRO_0000363516"
FT REPEAT 103..137
FT /note="PPR 1"
FT REPEAT 138..168
FT /note="PPR 2"
FT REPEAT 172..207
FT /note="PPR 3"
FT REPEAT 208..242
FT /note="PPR 4"
FT REPEAT 247..281
FT /note="PPR 5"
FT REPEAT 282..316
FT /note="PPR 6"
FT REPEAT 317..351
FT /note="PPR 7"
FT REPEAT 352..386
FT /note="PPR 8"
FT REPEAT 387..421
FT /note="PPR 9"
FT REPEAT 422..456
FT /note="PPR 10"
FT REPEAT 457..491
FT /note="PPR 11"
FT REPEAT 492..526
FT /note="PPR 12"
FT REPEAT 527..561
FT /note="PPR 13"
SQ SEQUENCE 609 AA; 69509 MW; A46A5312DFA631EB CRC64;
MAIASGSWVA TVNHHANPHS FTSPTKPIFF LSQKPHNFHV CSSRCSMVLE EDEKKSPSPK
EDKWPFFEPG PNDLNRVLSR FLRDPETRKL SSEFYEKAKE NSELRTTKHL ISYLVSSKSW
DLLVSVCEDL REHKALPDGQ TCSNLIRSCI RDRKFRITHC LLSVFRSDKS LAVSASDAAM
KGFNKLQMYS STIQVFDRLK QSVGVEPSPG CYCRIMEAHE KIGENHKVVE LFQEFKSQRL
SFLAKESGSI YTIVCSSLAK SGRAFEALEV LEEMKDKGIP ESSELYSMLI RAFAEAREVV
ITEKLFKEAG GKKLLKDPEM CLKVVLMYVR EGNMETTLEV VAAMRKAELK VTDCILCAIV
NGFSKQRGFA EAVKVYEWAM KEECEAGQVT YAIAINAYCR LEKYNKAEML FDEMVKKGFD
KCVVAYSNIM DMYGKTRRLS DAVRLMAKMK QRGCKPNIWI YNSLIDMHGR AMDLRRAEKI
WKEMKRAKVL PDKVSYTSMI SAYNRSKELE RCVELYQEFR MNRGKIDRAM AGIMVGVFSK
TSRIDELMRL LQDMKVEGTR LDARLYSSAL NALRDAGLNS QIRWLQESFD AAQTSTSKYS
NTKNTGTLS
