PP380_ARATH
ID PP380_ARATH Reviewed; 634 AA.
AC Q9FMU2;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 2.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g14080;
GN OrderedLocusNames=At5g14080; ORFNames=MUA22.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9501997; DOI=10.1093/dnares/4.6.401;
RA Nakamura Y., Sato S., Kaneko T., Kotani H., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. III. Sequence
RT features of the regions of 1,191,918 bp covered by seventeen physically
RT assigned P1 clones.";
RL DNA Res. 4:401-414(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 527-634.
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB08287.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BX834008; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB007650; BAB08287.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED91985.1; -; Genomic_DNA.
DR EMBL; BX831119; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; BX834008; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_196912.2; NM_121411.4.
DR AlphaFoldDB; Q9FMU2; -.
DR SMR; Q9FMU2; -.
DR BioGRID; 16535; 1.
DR STRING; 3702.AT5G14080.1; -.
DR PaxDb; Q9FMU2; -.
DR PRIDE; Q9FMU2; -.
DR ProteomicsDB; 249264; -.
DR EnsemblPlants; AT5G14080.1; AT5G14080.1; AT5G14080.
DR GeneID; 831257; -.
DR Gramene; AT5G14080.1; AT5G14080.1; AT5G14080.
DR KEGG; ath:AT5G14080; -.
DR Araport; AT5G14080; -.
DR TAIR; locus:2174633; AT5G14080.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_50_0_1; -.
DR InParanoid; Q9FMU2; -.
DR OMA; PRKEDYR; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FMU2; -.
DR PRO; PR:Q9FMU2; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FMU2; baseline and differential.
DR Genevisible; Q9FMU2; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 1.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 11.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..634
FT /note="Pentatricopeptide repeat-containing protein
FT At5g14080"
FT /id="PRO_0000363517"
FT REPEAT 81..115
FT /note="PPR 1"
FT REPEAT 116..150
FT /note="PPR 2"
FT REPEAT 151..185
FT /note="PPR 3"
FT REPEAT 186..220
FT /note="PPR 4"
FT REPEAT 222..256
FT /note="PPR 5"
FT REPEAT 257..291
FT /note="PPR 6"
FT REPEAT 292..326
FT /note="PPR 7"
FT REPEAT 327..360
FT /note="PPR 8"
FT REPEAT 361..395
FT /note="PPR 9"
FT REPEAT 396..430
FT /note="PPR 10"
FT REPEAT 431..465
FT /note="PPR 11"
FT REPEAT 466..500
FT /note="PPR 12"
FT REPEAT 501..535
FT /note="PPR 13"
FT CONFLICT 602
FT /note="S -> F (in Ref. 3; BX831119)"
FT /evidence="ECO:0000305"
FT CONFLICT 622
FT /note="D -> N (in Ref. 3; BX831119)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 634 AA; 71364 MW; 2CB5461F9F4423B7 CRC64;
MRPATELAVR IGRELLKVSG SSRAARIWSP LIEQSLHGLG FRHSISPSLV ARVIDPFLLN
HHSLALGFFN WAAQQPGYSH DSISYHSIFK SLSLSRQFSA MDALFKQVKS NKILLDSSVY
RSLIDTLVLG RKAQSAFWVL EEAFSTGQEI HPDVCNRLLA GLTSDGCYDY AQKLFVKMRH
KGVSLNTLGF GVYIGWFCRS SETNQLLRLV DEVKKANLNI NGSIIALLIL HSLCKCSREM
DAFYILEELR NIDCKPDFMA YRVIAEAFVV TGNLYERQVV LKKKRKLGVA PRSSDYRAFI
LDLISAKRLT EAKEVAEVIV SGKFPMDNDI LDALIGSVSA VDPDSAVEFL VYMVSTGKLP
AIRTLSKLSK NLCRHDKSDH LIKAYELLSS KGYFSELQSY SLMISFLCKA GRVRESYTAL
QEMKKEGLAP DVSLYNALIE ACCKAEMIRP AKKLWDEMFV EGCKMNLTTY NVLIRKLSEE
GEAEESLRLF DKMLERGIEP DETIYMSLIE GLCKETKIEA AMEVFRKCME RDHKTVTRRV
LSEFVLNLCS NGHSGEASQL LREREHLEHT GAHVVLLKCV ADAKEVEIGI RHMQWIKEVS
PSLVHTISSD LLASFCSSSD PDSILPFIRA IENT
