PP384_ARATH
ID PP384_ARATH Reviewed; 1227 AA.
AC Q9LXF4;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 100.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g15280, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At5g15280; ORFNames=F8M21_170;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 900-1227.
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [5]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND CLEAVAGE OF TRANSIT PEPTIDE AFTER
RP PHE-31.
RX PubMed=25732537; DOI=10.1093/jxb/erv064;
RA Carrie C., Venne A.S., Zahedi R.P., Soll J.;
RT "Identification of cleavage sites and substrate proteins for two
RT mitochondrial intermediate peptidases in Arabidopsis thaliana.";
RL J. Exp. Bot. 66:2691-2708(2015).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305|PubMed:25732537}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AK227133; Type=Frameshift; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL353993; CAB89338.1; -; Genomic_DNA.
DR EMBL; CP002688; AED92143.1; -; Genomic_DNA.
DR EMBL; AK227133; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; T49963; T49963.
DR RefSeq; NP_197032.1; NM_121532.4.
DR AlphaFoldDB; Q9LXF4; -.
DR SMR; Q9LXF4; -.
DR PaxDb; Q9LXF4; -.
DR PRIDE; Q9LXF4; -.
DR EnsemblPlants; AT5G15280.1; AT5G15280.1; AT5G15280.
DR GeneID; 831380; -.
DR Gramene; AT5G15280.1; AT5G15280.1; AT5G15280.
DR KEGG; ath:AT5G15280; -.
DR Araport; AT5G15280; -.
DR TAIR; locus:2150971; AT5G15280.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_7_1_1; -.
DR InParanoid; Q9LXF4; -.
DR OMA; QWGHDIS; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LXF4; -.
DR PRO; PR:Q9LXF4; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LXF4; baseline and differential.
DR Genevisible; Q9LXF4; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 7.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 22.
PE 1: Evidence at protein level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..31
FT /note="Mitochondrion"
FT /evidence="ECO:0000269|PubMed:25732537"
FT CHAIN 32..1227
FT /note="Pentatricopeptide repeat-containing protein
FT At5g15280, mitochondrial"
FT /id="PRO_0000363521"
FT REPEAT 146..180
FT /note="PPR 1"
FT REPEAT 182..216
FT /note="PPR 2"
FT REPEAT 217..251
FT /note="PPR 3"
FT REPEAT 255..289
FT /note="PPR 4"
FT REPEAT 290..320
FT /note="PPR 5"
FT REPEAT 322..356
FT /note="PPR 6"
FT REPEAT 357..391
FT /note="PPR 7"
FT REPEAT 392..426
FT /note="PPR 8"
FT REPEAT 427..461
FT /note="PPR 9"
FT REPEAT 527..561
FT /note="PPR 10"
FT REPEAT 562..597
FT /note="PPR 11"
FT REPEAT 598..632
FT /note="PPR 12"
FT REPEAT 633..667
FT /note="PPR 13"
FT REPEAT 668..698
FT /note="PPR 14"
FT REPEAT 703..737
FT /note="PPR 15"
FT REPEAT 738..772
FT /note="PPR 16"
FT REPEAT 773..800
FT /note="PPR 17"
FT REPEAT 802..836
FT /note="PPR 18"
FT REPEAT 837..871
FT /note="PPR 19"
FT REPEAT 872..906
FT /note="PPR 20"
FT REPEAT 908..942
FT /note="PPR 21"
FT REPEAT 943..977
FT /note="PPR 22"
FT REPEAT 978..1012
FT /note="PPR 23"
FT REPEAT 1014..1044
FT /note="PPR 24"
FT REPEAT 1047..1081
FT /note="PPR 25"
FT REPEAT 1082..1116
FT /note="PPR 26"
FT REPEAT 1117..1151
FT /note="PPR 27"
FT REPEAT 1152..1186
FT /note="PPR 28"
SQ SEQUENCE 1227 AA; 139609 MW; 373F9119CD8EB900 CRC64;
MLNLLSISSS SRLRFLNKVS SLTYHYSFAF FSTSSPASSS SSSLGNDSAI PRNYESSSFN
LLSRSKEKRD LTGSSLKDLL FDLSDVVPNI TRRFRRFPGL KPEDVLELSL GFESELQRGG
IGNIKVQALW EIFRWASVQY QGFKHLPQAC EIMASMLIRE GMVKEVELLL MEMERHGDTM
VNEGIFCDLI GKYVDDFDSR KAVMLFDWMR RKGLVPLTSC YQILIDQLVR VHRTESAYRI
CLDWVETRAE LNHMNIDSIG KVIELLCLDQ KVQEARVLAR KLVALGCILN SSIYSKITIG
YNEKQDFEDL LSFIGEVKYE PDVFVGNRIL HSLCRRFGSE RAYVYMEELE HLGFKQDEVT
FGILIGWCCY EGDIKRAVLY LSEIMSKGYK PDVYSYNAIL SGLFRKGLWQ HTHCILDEMK
ENGMMLSLST FKIMVTGYCK ARQFEEAKRI VNKMFGYGLI EASKVEDPLS EAFSLVGFDP
LAVRLKRDND STFSKAEFFD DLGNGLYLHT DLDAYEQRVN MVLDRSVLPE FNSLIVRASE
DGDLQTALRL LDEMARWGQK LSRRSFAVLM RSLCASRAHL RVSISLLEKW PKLAYQLDGE
TLNFLVQEYC KKGFSRHSKL IFHKMVQMHH PIDNVTYTSL IRCFCKKETL NDLLNVWGAA
QNDNWLPDLN DCGDLWNCLV RKGLVEEVVQ LFERVFISYP LSQSEACRIF VEKLTVLGFS
CIAHSVVKRL EGEGCIVEQE VYNHLIKGLC TEKKDSAAFA ILDEMLDKKH IPSLGSCLML
IPRLCRANKA GTAFNLAEQI DSSYVHYALI KGLSLAGKML DAENQLRIML SNGLSSYNKI
YNVMFQGYCK GNNWMKVEEV LGLMVRKNII CSVKSYREYV RKMCLEPQSL SAISLKEFLL
LGESNPGGVI IYNMLIFYMF RAKNHLEVNK VLLEMQGRGV LPDETTFNFL VHGYSSSADY
SSSLRYLSAM ISKGMKPNNR SLRAVTSSLC DNGDVKKALD LWQVMESKGW NLGSSVVQTK
IVETLISKGE IPKAEDFLTR VTRNGMMAPN YDNIIKKLSD RGNLDIAVHL LNTMLKNQSI
PGSSSYDSVI NGLLRYNQLD KAMDFHTEMV ELGLSPSIST WSGLVHKFCE ACQVLESERL
IKSMVGLGES PSQEMFKTVI DRFRVEKNTV KASEMMEMMQ KCGYEVDFET HWSLISNMSS
SKEKKTTTAG EGFLSRLLSG NGFTWKR
