PP385_ARATH
ID PP385_ARATH Reviewed; 548 AA.
AC Q9LXF2;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 2.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g15300;
GN Name=PCMP-E40; OrderedLocusNames=At5g15300; ORFNames=F8M21_190;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BX832059; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305};
CC Sequence=CAB89340.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL353993; CAB89340.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002688; AED92145.1; -; Genomic_DNA.
DR EMBL; BX832059; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; T49965; T49965.
DR RefSeq; NP_197034.2; NM_121534.3.
DR AlphaFoldDB; Q9LXF2; -.
DR SMR; Q9LXF2; -.
DR PaxDb; Q9LXF2; -.
DR PRIDE; Q9LXF2; -.
DR ProteomicsDB; 249009; -.
DR EnsemblPlants; AT5G15300.1; AT5G15300.1; AT5G15300.
DR GeneID; 831382; -.
DR Gramene; AT5G15300.1; AT5G15300.1; AT5G15300.
DR KEGG; ath:AT5G15300; -.
DR Araport; AT5G15300; -.
DR TAIR; locus:2150996; AT5G15300.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR OMA; HEVFWSM; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LXF2; -.
DR PRO; PR:Q9LXF2; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LXF2; baseline and differential.
DR Genevisible; Q9LXF2; AT.
DR GO; GO:0009507; C:chloroplast; IBA:GO_Central.
DR GO; GO:1900865; P:chloroplast RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..548
FT /note="Pentatricopeptide repeat-containing protein
FT At5g15300"
FT /id="PRO_0000363522"
FT REPEAT 76..110
FT /note="PPR 1"
FT REPEAT 111..145
FT /note="PPR 2"
FT REPEAT 146..176
FT /note="PPR 3"
FT REPEAT 177..211
FT /note="PPR 4"
FT REPEAT 212..238
FT /note="PPR 5"
FT REPEAT 239..273
FT /note="PPR 6"
FT REPEAT 274..308
FT /note="PPR 7"
FT REPEAT 314..348
FT /note="PPR 8"
FT REPEAT 349..378
FT /note="PPR 9"
FT REPEAT 379..409
FT /note="PPR 10"
FT REPEAT 415..445
FT /note="PPR 11"
FT REGION 450..525
FT /note="Type E motif"
SQ SEQUENCE 548 AA; 62112 MW; 4CF2C5856C717FAD CRC64;
MIRRQTNDRT TNRRRPKLWQ NCKNIRTLKQ IHASMVVNGL MSNLSVVGEL IYSASLSVPG
ALKYAHKLFD EIPKPDVSIC NHVLRGSAQS MKPEKTVSLY TEMEKRGVSP DRYTFTFVLK
ACSKLEWRSN GFAFHGKVVR HGFVLNEYVK NALILFHANC GDLGIASELF DDSAKAHKVA
WSSMTSGYAK RGKIDEAMRL FDEMPYKDQV AWNVMITGCL KCKEMDSARE LFDRFTEKDV
VTWNAMISGY VNCGYPKEAL GIFKEMRDAG EHPDVVTILS LLSACAVLGD LETGKRLHIY
ILETASVSSS IYVGTPIWNA LIDMYAKCGS IDRAIEVFRG VKDRDLSTWN TLIVGLALHH
AEGSIEMFEE MQRLKVWPNE VTFIGVILAC SHSGRVDEGR KYFSLMRDMY NIEPNIKHYG
CMVDMLGRAG QLEEAFMFVE SMKIEPNAIV WRTLLGACKI YGNVELGKYA NEKLLSMRKD
ESGDYVLLSN IYASTGQWDG VQKVRKMFDD TRVKKPTGVS LIEEDDDKLM MRYLLSSEPE
SRSRGRIN
