ID   PP387_ARATH             Reviewed;         668 AA.
AC   Q8LPF1; Q56WY8; Q9LFS6;
DT   10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2002, sequence version 1.
DT   25-MAY-2022, entry version 102.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At5g15980, mitochondrial;
DE   Flags: Precursor;
GN   OrderedLocusNames=At5g15980; ORFNames=F1N13_120;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130714; DOI=10.1038/35048507;
RA   Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA   Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA   Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA   Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA   Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA   O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA   Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA   Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA   Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA   Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA   Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA   Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA   Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA   Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA   Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA   Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA   McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA   Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA   Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA   Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA   Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA   Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA   Bevan M., Fransz P.F.;
RT   "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL   Nature 408:823-826(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 373-668.
RC   STRAIN=cv. Columbia;
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA   Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA   Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA   Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA   Shinozaki K.;
RT   "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL   Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN   [5]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=BAD94238.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC       Sequence=CAC01797.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AL391145; CAC01797.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; CP002688; AED92232.1; -; Genomic_DNA.
DR   EMBL; AY102122; AAM26690.1; -; mRNA.
DR   EMBL; BT002274; AAN72285.1; -; mRNA.
DR   EMBL; AK221891; BAD94238.1; ALT_INIT; mRNA.
DR   PIR; T51381; T51381.
DR   RefSeq; NP_197102.2; NM_121603.4.
DR   AlphaFoldDB; Q8LPF1; -.
DR   SMR; Q8LPF1; -.
DR   BioGRID; 16731; 2.
DR   IntAct; Q8LPF1; 1.
DR   STRING; 3702.AT5G15980.1; -.
DR   iPTMnet; Q8LPF1; -.
DR   SwissPalm; Q8LPF1; -.
DR   PaxDb; Q8LPF1; -.
DR   PRIDE; Q8LPF1; -.
DR   ProteomicsDB; 249268; -.
DR   EnsemblPlants; AT5G15980.1; AT5G15980.1; AT5G15980.
DR   GeneID; 831455; -.
DR   Gramene; AT5G15980.1; AT5G15980.1; AT5G15980.
DR   KEGG; ath:AT5G15980; -.
DR   Araport; AT5G15980; -.
DR   TAIR; locus:2146072; AT5G15980.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_022294_0_0_1; -.
DR   InParanoid; Q8LPF1; -.
DR   OMA; PFIDPFM; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q8LPF1; -.
DR   PRO; PR:Q8LPF1; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q8LPF1; baseline and differential.
DR   Genevisible; Q8LPF1; AT.
DR   GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR   GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR   GO; GO:0008380; P:RNA splicing; IEA:InterPro.
DR   Gene3D; 1.25.40.10; -; 2.
DR   InterPro; IPR044578; BIR6-like.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   PANTHER; PTHR47003; PTHR47003; 1.
DR   Pfam; PF01535; PPR; 3.
DR   TIGRFAMs; TIGR00756; PPR; 2.
DR   PROSITE; PS51375; PPR; 8.
PE   2: Evidence at transcript level;
KW   Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT   TRANSIT         1..36
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           37..668
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At5g15980, mitochondrial"
FT                   /id="PRO_0000363524"
FT   REPEAT          286..320
FT                   /note="PPR 1"
FT   REPEAT          321..355
FT                   /note="PPR 2"
FT   REPEAT          396..430
FT                   /note="PPR 3"
FT   REPEAT          431..465
FT                   /note="PPR 4"
FT   REPEAT          466..496
FT                   /note="PPR 5"
FT   REPEAT          502..537
FT                   /note="PPR 6"
FT   REPEAT          543..577
FT                   /note="PPR 7"
SQ   SEQUENCE   668 AA;  75298 MW;  EFF36F34B4347E08 CRC64;
     MRYQQWRLML LRSYHRSHLP YLSPCSQVTS ISSRSFSSFI HPGIGALQQS EQLCPLRSPM
     TSSGNLVKSV GRSFSSEPAV EEKSSAEATV IDIFSRLSGE DEIRKELESS GVVISQDLAL
     KVLRKLESNP DVAKSFFQWI KEASPEELSS KNYNMMLRIL GGNGLVDEFW GLVDVMKKKG
     HGLSANVRDK VGDKFQKDGL ESDLLRLRKL FTSDCLDNSA ENVCDRVCKI VMKEEWGDDV
     EKRVRDLNVE FKSDLVKMIV ERLDVEPRKA LLFFRWIDES DLFKHDEKTY NAMARVLGKE
     KFLDRFQNIV VEMRSAGYEV EIETYVRVST RFCQTKLIKE AVDLFEIAMA GSSSSNNPTP
     HCFCLLLKKI VTAKILDMDL FSRAVKVYTK NGNALTDSLL KSVLKSLRSV DRVEQSNELL
     KEMKRGGYVP SGDMQSMIAS SLSRKGKKDE ADEFVDFMES SGNNLDDKAM ASLVEGYCDS
     GNLDEALVCF EKMVGNTGVS YADYSFEKLV LAYCNKNQVR DAYKLLSAQV TKNQLKPRHS
     TYKSLVTNLL TKKIARDGGF EEALSLLPIM KDHGFPPFID PFMSYFSSTG KSTEALGFLK
     AMTSNNFPYI SVVLRVFETM MKSARHSEAQ DLLSLCPNYI RNNPDVLELF NTMKPNESAV
     EKPLAASA