PP388_ARATH
ID PP388_ARATH Reviewed; 535 AA.
AC Q9FFE3;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 105.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g16420, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At5g16420; ORFNames=MQK4.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9330910; DOI=10.1093/dnares/4.3.215;
RA Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M.,
RA Miyajima N., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence
RT features of the 1.6 Mb regions covered by twenty physically assigned P1
RT clones.";
RL DNA Res. 4:215-230(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB005242; BAB09609.1; -; Genomic_DNA.
DR EMBL; CP002688; AED92290.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM69354.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM69355.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM69356.1; -; Genomic_DNA.
DR RefSeq; NP_001331039.1; NM_001343450.1.
DR RefSeq; NP_001331040.1; NM_001343449.1.
DR RefSeq; NP_001331041.1; NM_001343448.1.
DR RefSeq; NP_197146.1; NM_121647.2.
DR AlphaFoldDB; Q9FFE3; -.
DR SMR; Q9FFE3; -.
DR PaxDb; Q9FFE3; -.
DR PRIDE; Q9FFE3; -.
DR ProteomicsDB; 249269; -.
DR EnsemblPlants; AT5G16420.1; AT5G16420.1; AT5G16420.
DR EnsemblPlants; AT5G16420.2; AT5G16420.2; AT5G16420.
DR EnsemblPlants; AT5G16420.3; AT5G16420.3; AT5G16420.
DR EnsemblPlants; AT5G16420.4; AT5G16420.4; AT5G16420.
DR GeneID; 831503; -.
DR Gramene; AT5G16420.1; AT5G16420.1; AT5G16420.
DR Gramene; AT5G16420.2; AT5G16420.2; AT5G16420.
DR Gramene; AT5G16420.3; AT5G16420.3; AT5G16420.
DR Gramene; AT5G16420.4; AT5G16420.4; AT5G16420.
DR KEGG; ath:AT5G16420; -.
DR Araport; AT5G16420; -.
DR TAIR; locus:2171352; AT5G16420.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9FFE3; -.
DR OMA; DRGWLPD; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FFE3; -.
DR PRO; PR:Q9FFE3; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FFE3; baseline and differential.
DR Genevisible; Q9FFE3; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 3.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..28
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 29..535
FT /note="Pentatricopeptide repeat-containing protein
FT At5g16420, mitochondrial"
FT /id="PRO_0000363525"
FT REPEAT 82..112
FT /note="PPR 1"
FT REPEAT 119..153
FT /note="PPR 2"
FT REPEAT 154..189
FT /note="PPR 3"
FT REPEAT 190..224
FT /note="PPR 4"
FT REPEAT 225..259
FT /note="PPR 5"
FT REPEAT 260..294
FT /note="PPR 6"
FT REPEAT 295..329
FT /note="PPR 7"
FT REPEAT 330..364
FT /note="PPR 8"
FT REPEAT 365..395
FT /note="PPR 9"
FT REPEAT 399..433
FT /note="PPR 10"
FT REPEAT 434..468
FT /note="PPR 11"
FT REPEAT 469..503
FT /note="PPR 12"
SQ SEQUENCE 535 AA; 60933 MW; F013469D0623056E CRC64;
MFLSRVNPTR FPPFVASRRL FSASASAASL QQYCTEKPPI KPWPQRLFPK RLVSMITQQQ
NIDLALQIFL YAGKSHPGFT HNYDTYHSIL FKLSRARAFD PVESLMADLR NSYPPIKCGE
NLFIDLLRNY GLAGRYESSM RIFLRIPDFG VKRSVRSLNT LLNVLIQNQR FDLVHAMFKN
SKESFGITPN IFTCNLLVKA LCKKNDIESA YKVLDEIPSM GLVPNLVTYT TILGGYVARG
DMESAKRVLE EMLDRGWYPD ATTYTVLMDG YCKLGRFSEA ATVMDDMEKN EIEPNEVTYG
VMIRALCKEK KSGEARNMFD EMLERSFMPD SSLCCKVIDA LCEDHKVDEA CGLWRKMLKN
NCMPDNALLS TLIHWLCKEG RVTEARKLFD EFEKGSIPSL LTYNTLIAGM CEKGELTEAG
RLWDDMYERK CKPNAFTYNV LIEGLSKNGN VKEGVRVLEE MLEIGCFPNK TTFLILFEGL
QKLGKEEDAM KIVSMAVMNG KVDKESWELF LKKFAGELDK GVLPLKELLH EISVS
