ID   PP389_ARATH             Reviewed;         504 AA.
AC   Q9FMD3;
DT   10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT   01-MAR-2001, sequence version 1.
DT   03-AUG-2022, entry version 109.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At5g16640, mitochondrial;
DE   Flags: Precursor;
GN   OrderedLocusNames=At5g16640; ORFNames=MTG13.9;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=9501997; DOI=10.1093/dnares/4.6.401;
RA   Nakamura Y., Sato S., Kaneko T., Kotani H., Asamizu E., Miyajima N.,
RA   Tabata S.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 5. III. Sequence
RT   features of the regions of 1,191,918 bp covered by seventeen physically
RT   assigned P1 clones.";
RL   DNA Res. 4:401-414(1997).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA   Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA   Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA   Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA   Shinozaki K.;
RT   "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL   Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN   [4]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AB008270; BAB10191.1; -; Genomic_DNA.
DR   EMBL; CP002688; AED92321.1; -; Genomic_DNA.
DR   EMBL; AK228701; BAF00605.1; -; mRNA.
DR   RefSeq; NP_197167.1; NM_121670.4.
DR   AlphaFoldDB; Q9FMD3; -.
DR   SMR; Q9FMD3; -.
DR   STRING; 3702.AT5G16640.1; -.
DR   PaxDb; Q9FMD3; -.
DR   PRIDE; Q9FMD3; -.
DR   ProteomicsDB; 249270; -.
DR   EnsemblPlants; AT5G16640.1; AT5G16640.1; AT5G16640.
DR   GeneID; 831526; -.
DR   Gramene; AT5G16640.1; AT5G16640.1; AT5G16640.
DR   KEGG; ath:AT5G16640; -.
DR   Araport; AT5G16640; -.
DR   TAIR; locus:2174165; AT5G16640.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_49_0_1; -.
DR   InParanoid; Q9FMD3; -.
DR   OMA; WRREEAN; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q9FMD3; -.
DR   PRO; PR:Q9FMD3; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q9FMD3; baseline and differential.
DR   Genevisible; Q9FMD3; AT.
DR   GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR   Gene3D; 1.25.40.10; -; 6.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF13041; PPR_2; 6.
DR   TIGRFAMs; TIGR00756; PPR; 11.
DR   PROSITE; PS51375; PPR; 13.
PE   2: Evidence at transcript level;
KW   Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT   TRANSIT         1..43
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           44..504
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At5g16640, mitochondrial"
FT                   /id="PRO_0000363526"
FT   REPEAT          45..79
FT                   /note="PPR 1"
FT   REPEAT          80..114
FT                   /note="PPR 2"
FT   REPEAT          115..149
FT                   /note="PPR 3"
FT   REPEAT          150..184
FT                   /note="PPR 4"
FT   REPEAT          185..219
FT                   /note="PPR 5"
FT   REPEAT          220..254
FT                   /note="PPR 6"
FT   REPEAT          255..289
FT                   /note="PPR 7"
FT   REPEAT          290..324
FT                   /note="PPR 8"
FT   REPEAT          325..359
FT                   /note="PPR 9"
FT   REPEAT          360..394
FT                   /note="PPR 10"
FT   REPEAT          395..429
FT                   /note="PPR 11"
FT   REPEAT          430..464
FT                   /note="PPR 12"
FT   REPEAT          465..499
FT                   /note="PPR 13"
SQ   SEQUENCE   504 AA;  57211 MW;  13306925556935A1 CRC64;
     MRRSISSKAK SFLHRNLLYS GNSGTSPSSS FSICGFCFSR RAYSNGSDYR EMLRNGIRFM
     KLDDSLDLFF HMVQCRPLPS IADFSRLLSA ISKMKKYDVV IYLWEQMQML GIPHNLCTCN
     ILLNCFCRCS QLSLALSFLG KMIKLGHEPS IVTFGSLLNG FCRGDRVYDA LYMFDQMVGM
     GYKPNVVIYN TIIDGLCKSK QVDNALDLLN RMEKDGIGPD VVTYNSLISG LCSSGRWSDA
     TRMVSCMTKR EIYPDVFTFN ALIDACVKEG RVSEAEEFYE EMIRRSLDPD IVTYSLLIYG
     LCMYSRLDEA EEMFGFMVSK GCFPDVVTYS ILINGYCKSK KVEHGMKLFC EMSQRGVVRN
     TVTYTILIQG YCRAGKLNVA EEIFRRMVFC GVHPNIITYN VLLHGLCDNG KIEKALVILA
     DMQKNGMDAD IVTYNIIIRG MCKAGEVADA WDIYCSLNCQ GLMPDIWTYT TMMLGLYKKG
     LRREADALFR KMKEDGILPN ECYV