PP390_ARATH
ID PP390_ARATH Reviewed; 850 AA.
AC Q9LFL5;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g16860;
GN Name=PCMP-H92; OrderedLocusNames=At5g16860; ORFNames=F2K13_10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL391141; CAC01699.1; -; Genomic_DNA.
DR EMBL; CP002688; AED92350.1; -; Genomic_DNA.
DR PIR; T51541; T51541.
DR RefSeq; NP_197188.1; NM_121692.2.
DR AlphaFoldDB; Q9LFL5; -.
DR SMR; Q9LFL5; -.
DR STRING; 3702.AT5G16860.1; -.
DR PaxDb; Q9LFL5; -.
DR PRIDE; Q9LFL5; -.
DR ProteomicsDB; 249271; -.
DR EnsemblPlants; AT5G16860.1; AT5G16860.1; AT5G16860.
DR GeneID; 831549; -.
DR Gramene; AT5G16860.1; AT5G16860.1; AT5G16860.
DR KEGG; ath:AT5G16860; -.
DR Araport; AT5G16860; -.
DR TAIR; locus:2148101; AT5G16860.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_9_1; -.
DR InParanoid; Q9LFL5; -.
DR OMA; EMPMEPP; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LFL5; -.
DR PRO; PR:Q9LFL5; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LFL5; baseline and differential.
DR Genevisible; Q9LFL5; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 8.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 14.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..850
FT /note="Pentatricopeptide repeat-containing protein
FT At5g16860"
FT /id="PRO_0000363527"
FT REPEAT 58..88
FT /note="PPR 1"
FT REPEAT 91..125
FT /note="PPR 2"
FT REPEAT 126..160
FT /note="PPR 3"
FT REPEAT 161..191
FT /note="PPR 4"
FT REPEAT 192..227
FT /note="PPR 5"
FT REPEAT 228..262
FT /note="PPR 6"
FT REPEAT 263..293
FT /note="PPR 7"
FT REPEAT 294..328
FT /note="PPR 8"
FT REPEAT 329..363
FT /note="PPR 9"
FT REPEAT 364..398
FT /note="PPR 10"
FT REPEAT 406..436
FT /note="PPR 11"
FT REPEAT 439..473
FT /note="PPR 12"
FT REPEAT 476..510
FT /note="PPR 13"
FT REPEAT 512..542
FT /note="PPR 14"
FT REPEAT 543..577
FT /note="PPR 15"
FT REPEAT 578..608
FT /note="PPR 16"
FT REPEAT 614..644
FT /note="PPR 17"
FT REGION 649..724
FT /note="Type E motif"
FT REGION 725..755
FT /note="Type E(+) motif"
FT REGION 756..850
FT /note="Type DYW motif"
SQ SEQUENCE 850 AA; 94637 MW; 3ED867415655646D CRC64;
MIRRLLIPNA AAKSHQYIKV SLFSTSAPEI TPPFIHKCKT ISQVKLIHQK LLSFGILTLN
LTSHLISTYI SVGCLSHAVS LLRRFPPSDA GVYHWNSLIR SYGDNGCANK CLYLFGLMHS
LSWTPDNYTF PFVFKACGEI SSVRCGESAH ALSLVTGFIS NVFVGNALVA MYSRCRSLSD
ARKVFDEMSV WDVVSWNSII ESYAKLGKPK VALEMFSRMT NEFGCRPDNI TLVNVLPPCA
SLGTHSLGKQ LHCFAVTSEM IQNMFVGNCL VDMYAKCGMM DEANTVFSNM SVKDVVSWNA
MVAGYSQIGR FEDAVRLFEK MQEEKIKMDV VTWSAAISGY AQRGLGYEAL GVCRQMLSSG
IKPNEVTLIS VLSGCASVGA LMHGKEIHCY AIKYPIDLRK NGHGDENMVI NQLIDMYAKC
KKVDTARAMF DSLSPKERDV VTWTVMIGGY SQHGDANKAL ELLSEMFEED CQTRPNAFTI
SCALVACASL AALRIGKQIH AYALRNQQNA VPLFVSNCLI DMYAKCGSIS DARLVFDNMM
AKNEVTWTSL MTGYGMHGYG EEALGIFDEM RRIGFKLDGV TLLVVLYACS HSGMIDQGME
YFNRMKTVFG VSPGPEHYAC LVDLLGRAGR LNAALRLIEE MPMEPPPVVW VAFLSCCRIH
GKVELGEYAA EKITELASNH DGSYTLLSNL YANAGRWKDV TRIRSLMRHK GVKKRPGCSW
VEGIKGTTTF FVGDKTHPHA KEIYQVLLDH MQRIKDIGYV PETGFALHDV DDEEKDDLLF
EHSEKLALAY GILTTPQGAA IRITKNLRVC GDCHTAFTYM SRIIDHDIIL RDSSRFHHFK
NGSCSCKGYW
