ID   PP391_ARATH             Reviewed;         459 AA.
AC   Q94JX6;
DT   10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT   10-FEB-2009, sequence version 2.
DT   03-AUG-2022, entry version 106.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At5g18390, mitochondrial;
DE   Flags: Precursor;
GN   OrderedLocusNames=At5g18390; ORFNames=F20L16_110;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130714; DOI=10.1038/35048507;
RA   Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA   Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA   Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA   Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA   Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA   O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA   Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA   Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA   Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA   Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA   Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA   Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA   Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA   Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA   Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA   Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA   McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA   Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA   Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA   Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA   Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA   Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA   Bevan M., Fransz P.F.;
RT   "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL   Nature 408:823-826(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 274-459.
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [4]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AC051626; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; CP002688; AED92549.1; -; Genomic_DNA.
DR   EMBL; AF370559; AAK48986.1; -; mRNA.
DR   EMBL; BT002595; AAO00955.1; -; mRNA.
DR   RefSeq; NP_197340.1; NM_121844.2.
DR   AlphaFoldDB; Q94JX6; -.
DR   SMR; Q94JX6; -.
DR   PaxDb; Q94JX6; -.
DR   PRIDE; Q94JX6; -.
DR   ProteomicsDB; 249272; -.
DR   EnsemblPlants; AT5G18390.1; AT5G18390.1; AT5G18390.
DR   GeneID; 831957; -.
DR   Gramene; AT5G18390.1; AT5G18390.1; AT5G18390.
DR   KEGG; ath:AT5G18390; -.
DR   Araport; AT5G18390; -.
DR   TAIR; locus:2146288; AT5G18390.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_49_0_1; -.
DR   InParanoid; Q94JX6; -.
DR   OMA; LVNAWCS; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q94JX6; -.
DR   PRO; PR:Q94JX6; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q94JX6; baseline and differential.
DR   Genevisible; Q94JX6; AT.
DR   GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR   Gene3D; 1.25.40.10; -; 3.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF01535; PPR; 4.
DR   Pfam; PF12854; PPR_1; 1.
DR   Pfam; PF13041; PPR_2; 1.
DR   TIGRFAMs; TIGR00756; PPR; 5.
DR   PROSITE; PS51375; PPR; 9.
PE   2: Evidence at transcript level;
KW   Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT   TRANSIT         1..7
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           8..459
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At5g18390, mitochondrial"
FT                   /id="PRO_0000363528"
FT   REPEAT          110..144
FT                   /note="PPR 1"
FT   REPEAT          145..175
FT                   /note="PPR 2"
FT   REPEAT          181..215
FT                   /note="PPR 3"
FT   REPEAT          216..250
FT                   /note="PPR 4"
FT   REPEAT          251..285
FT                   /note="PPR 5"
FT   REPEAT          286..320
FT                   /note="PPR 6"
FT   REPEAT          321..355
FT                   /note="PPR 7"
FT   REPEAT          356..390
FT                   /note="PPR 8"
FT   REPEAT          391..425
FT                   /note="PPR 9"
SQ   SEQUENCE   459 AA;  51770 MW;  9E6FA507C1DE7F3F CRC64;
     MLLLRRYSGG SLYSILPIRA SIESTIRHFN SLEPLQSSDS TPTKGDYFAA INHVVNIVRR
     EIHPERSLNS LRLPVTSEFV FRVLRATSRS SNDSLRFFNW ARSNPSYTPT SMEYEELAKS
     LASHKKYESM WKILKQMKDL SLDISGETLC FIIEQYGKNG HVDQAVELFN GVPKTLGCQQ
     TVDVYNSLLH ALCDVKMFHG AYALIRRMIR KGLKPDKRTY AILVNGWCSA GKMKEAQEFL
     DEMSRRGFNP PARGRDLLIE GLLNAGYLES AKEMVSKMTK GGFVPDIQTF NILIEAISKS
     GEVEFCIEMY YTACKLGLCV DIDTYKTLIP AVSKIGKIDE AFRLLNNCVE DGHKPFPSLY
     APIIKGMCRN GMFDDAFSFF SDMKVKAHPP NRPVYTMLIT MCGRGGKFVD AANYLVEMTE
     MGLVPISRCF DMVTDGLKNG GKHDLAMRIE QLEVQLRGV