PP393_ARATH
ID PP393_ARATH Reviewed; 483 AA.
AC Q8GYM2;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 2.
DT 03-AUG-2022, entry version 89.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g18950;
GN OrderedLocusNames=At5g18950; ORFNames=F17K4_200;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 263-483.
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC42180.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC068655; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED92632.1; -; Genomic_DNA.
DR EMBL; AK117517; BAC42180.1; ALT_INIT; mRNA.
DR RefSeq; NP_197396.1; NM_121900.3.
DR AlphaFoldDB; Q8GYM2; -.
DR SMR; Q8GYM2; -.
DR PaxDb; Q8GYM2; -.
DR PRIDE; Q8GYM2; -.
DR ProteomicsDB; 249274; -.
DR EnsemblPlants; AT5G18950.1; AT5G18950.1; AT5G18950.
DR GeneID; 832013; -.
DR Gramene; AT5G18950.1; AT5G18950.1; AT5G18950.
DR KEGG; ath:AT5G18950; -.
DR Araport; AT5G18950; -.
DR TAIR; locus:2144915; AT5G18950.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q8GYM2; -.
DR OMA; EAYCIFK; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q8GYM2; -.
DR PRO; PR:Q8GYM2; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q8GYM2; baseline and differential.
DR Genevisible; Q8GYM2; AT.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 9.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..483
FT /note="Pentatricopeptide repeat-containing protein
FT At5g18950"
FT /id="PRO_0000363530"
FT REPEAT 144..178
FT /note="PPR 1"
FT REPEAT 179..213
FT /note="PPR 2"
FT REPEAT 218..246
FT /note="PPR 3"
FT REPEAT 247..281
FT /note="PPR 4"
FT REPEAT 282..316
FT /note="PPR 5"
FT REPEAT 317..351
FT /note="PPR 6"
FT REPEAT 352..386
FT /note="PPR 7"
FT REPEAT 387..421
FT /note="PPR 8"
FT REPEAT 422..456
FT /note="PPR 9"
FT CONFLICT 263
FT /note="N -> I (in Ref. 3; BAC42180)"
FT /evidence="ECO:0000305"
FT CONFLICT 359
FT /note="M -> I (in Ref. 3; BAC42180)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 483 AA; 55000 MW; 8D3DB6929211D2CE CRC64;
MSRGQSYLIS FFRNRTRKNP NTQIRSLTVE SRDCESKPDE QKSAVSYTEM AKTVSTIMRE
RQRWQQTLVS DFPSFDFADP LFFGELLKSQ NNVLFSLWFF RWLCSNYDYT PGPVSLNILF
GALLDGKAVK AAKSFLDTTG FKPEPTLLEQ YVKCLSEEGL VEEAIEVYNV LKDMGISSSV
VTCNSVLLGC LKARKLDRFW ELHKEMVESE FDSERIRCLI RALCDGGDVS EGYELLKQGL
KQGLDPGQYV YAKLISGFCE IGNYACMSEV LHTMIAWNHF PSMYIYQKII KGLCMNKKQL
EAYCIFKNLK DKGYAPDRVV YTTMIRGFCE KGWLGSARKL WFEMIKKGMR PNEFAYNVMI
HGHFKRGEIS LVEAFYNEML RNGYGGTMLS CNTMIKGFCS HGKSDEAFEI FKNMSETGVT
PNAITYNALI KGFCKENKVE KGLKLYKELK ALGLKPSGMA YAALVRNLKM SDSVATSLNL
EIV
