PP396_ARATH
ID PP396_ARATH Reviewed; 593 AA.
AC Q8L6Y3; Q8GYX7;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2002, sequence version 1.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g24830;
GN OrderedLocusNames=At5g24830; ORFNames=F6A4_40, T4C12.4;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AF069716; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AL392145; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED93367.1; -; Genomic_DNA.
DR EMBL; AK117329; BAC41999.1; -; mRNA.
DR EMBL; AY140089; AAM98230.1; -; mRNA.
DR EMBL; BT008362; AAP37721.1; -; mRNA.
DR RefSeq; NP_568460.1; NM_122392.5.
DR AlphaFoldDB; Q8L6Y3; -.
DR SMR; Q8L6Y3; -.
DR PaxDb; Q8L6Y3; -.
DR PRIDE; Q8L6Y3; -.
DR EnsemblPlants; AT5G24830.1; AT5G24830.1; AT5G24830.
DR GeneID; 832552; -.
DR Gramene; AT5G24830.1; AT5G24830.1; AT5G24830.
DR KEGG; ath:AT5G24830; -.
DR Araport; AT5G24830; -.
DR TAIR; locus:2149433; AT5G24830.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q8L6Y3; -.
DR OMA; VMSRMGV; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q8L6Y3; -.
DR PRO; PR:Q8L6Y3; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q8L6Y3; baseline and differential.
DR Genevisible; Q8L6Y3; AT.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 5.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..593
FT /note="Pentatricopeptide repeat-containing protein
FT At5g24830"
FT /id="PRO_0000363533"
FT REPEAT 120..154
FT /note="PPR 1"
FT REPEAT 155..189
FT /note="PPR 2"
FT REPEAT 190..224
FT /note="PPR 3"
FT REPEAT 225..256
FT /note="PPR 4"
FT REPEAT 264..298
FT /note="PPR 5"
FT REPEAT 299..333
FT /note="PPR 6"
FT REPEAT 334..368
FT /note="PPR 7"
FT REPEAT 369..403
FT /note="PPR 8"
FT REPEAT 404..438
FT /note="PPR 9"
FT REPEAT 439..473
FT /note="PPR 10"
FT REPEAT 474..508
FT /note="PPR 11"
FT REPEAT 509..543
FT /note="PPR 12"
FT CONFLICT 46
FT /note="F -> L (in Ref. 3; BAC41999)"
FT /evidence="ECO:0000305"
FT CONFLICT 112
FT /note="T -> A (in Ref. 3; BAC41999)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 593 AA; 66536 MW; A5C1D7937A16A2C5 CRC64;
MALLISCGEV TSSQFTVFRL LNQSLDFVSD NVSRLLAPIF TNLRDFEMRL SCIERPPSIS
GNHSHLCTEK WFSDQKDYDQ KEDPEAIFNV LDYILKSSLD RLASLRESVC QTKSFDYDDC
LSIHSSIMRD LCLQGKLDAA LWLRKKMIYS GVIPGLITHN HLLNGLCKAG YIEKADGLVR
EMREMGPSPN CVSYNTLIKG LCSVNNVDKA LYLFNTMNKY GIRPNRVTCN IIVHALCQKG
VIGNNNKKLL EEILDSSQAN APLDIVICTI LMDSCFKNGN VVQALEVWKE MSQKNVPADS
VVYNVIIRGL CSSGNMVAAY GFMCDMVKRG VNPDVFTYNT LISALCKEGK FDEACDLHGT
MQNGGVAPDQ ISYKVIIQGL CIHGDVNRAN EFLLSMLKSS LLPEVLLWNV VIDGYGRYGD
TSSALSVLNL MLSYGVKPNV YTNNALIHGY VKGGRLIDAW WVKNEMRSTK IHPDTTTYNL
LLGAACTLGH LRLAFQLYDE MLRRGCQPDI ITYTELVRGL CWKGRLKKAE SLLSRIQATG
ITIDHVPFLI LAKKYTRLQR PGEAYLVYKK WLATRNRGVS CPSILNHMHT EEQ
