PP397_ARATH
ID PP397_ARATH Reviewed; 574 AA.
AC Q8GZ63; F4JY72;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 16-NOV-2011, sequence version 2.
DT 25-MAY-2022, entry version 102.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g25630;
GN OrderedLocusNames=At5g25630; ORFNames=T14C9_170;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q8GZ63-1; Sequence=Displayed;
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC006601; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED93475.1; -; Genomic_DNA.
DR EMBL; AK117187; BAC41864.1; -; mRNA.
DR EMBL; BT005927; AAO64862.1; -; mRNA.
DR RefSeq; NP_197945.2; NM_122474.4. [Q8GZ63-1]
DR AlphaFoldDB; Q8GZ63; -.
DR SMR; Q8GZ63; -.
DR iPTMnet; Q8GZ63; -.
DR PaxDb; Q8GZ63; -.
DR PRIDE; Q8GZ63; -.
DR ProteomicsDB; 249278; -. [Q8GZ63-1]
DR EnsemblPlants; AT5G25630.1; AT5G25630.1; AT5G25630. [Q8GZ63-1]
DR GeneID; 832639; -.
DR Gramene; AT5G25630.1; AT5G25630.1; AT5G25630. [Q8GZ63-1]
DR KEGG; ath:AT5G25630; -.
DR Araport; AT5G25630; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q8GZ63; -.
DR PRO; PR:Q8GZ63; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q8GZ63; baseline and differential.
DR Genevisible; Q8GZ63; AT.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 4.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome; Repeat.
FT CHAIN 1..574
FT /note="Pentatricopeptide repeat-containing protein
FT At5g25630"
FT /id="PRO_0000363534"
FT REPEAT 44..78
FT /note="PPR 1"
FT REPEAT 79..113
FT /note="PPR 2"
FT REPEAT 114..148
FT /note="PPR 3"
FT REPEAT 149..183
FT /note="PPR 4"
FT REPEAT 187..221
FT /note="PPR 5"
FT REPEAT 222..258
FT /note="PPR 6"
FT REPEAT 259..293
FT /note="PPR 7"
FT REPEAT 294..328
FT /note="PPR 8"
FT REPEAT 329..363
FT /note="PPR 9"
FT REPEAT 364..394
FT /note="PPR 10"
FT REPEAT 398..432
FT /note="PPR 11"
FT REPEAT 433..467
FT /note="PPR 12"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..15
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 380
FT /note="E -> G (in Ref. 3; BAC41864 and 4; AAO64862)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 574 AA; 63894 MW; 1C46D4EEC5CFDC6F CRC64;
MEDVNQEKKK VPPMSEPERS TPIKTTGGQY RFCKSCVEGS SCRTVRSRTK LMNVLIERGR
PHEAQTVFKT LAETGHRPSL ISYTTLLAAM TVQKQYGSIS SIVSEVEQSG TKLDSIFFNA
VINAFSESGN MEDAVQALLK MKELGLNPTT STYNTLIKGY GIAGKPERSS ELLDLMLEEG
NVDVGPNIRT FNVLVQAWCK KKKVEEAWEV VKKMEECGVR PDTVTYNTIA TCYVQKGETV
RAESEVVEKM VMKEKAKPNG RTCGIVVGGY CREGRVRDGL RFVRRMKEMR VEANLVVFNS
LINGFVEVMD RDGIDEVLTL MKECNVKADV ITYSTVMNAW SSAGYMEKAA QVFKEMVKAG
VKPDAHAYSI LAKGYVRAKE PKKAEELLET LIVESRPNVV IFTTVISGWC SNGSMDDAMR
VFNKMCKFGV SPNIKTFETL MWGYLEVKQP WKAEEVLQMM RGCGVKPENS TFLLLAEAWR
VAGLTDESNK AINALKCKDI EIAKLEKLYQ KQSSGSSFNL LQIPVGKREL PTAKAMNLSA
CKLGARVPII CQKQSQAQFG ISGQFVHSCT VFLS
