PP399_ARATH
ID PP399_ARATH Reviewed; 1038 AA.
AC O04647;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 2.
DT 03-AUG-2022, entry version 128.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g27270;
DE AltName: Full=Protein EMBRYO DEFECTIVE 976;
GN Name=EMB976; OrderedLocusNames=At5g27270;
GN ORFNames=A_TM021B04.10, F21A20.6, T21B4.180;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAB61077.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007123; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AF007271; AAB61077.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED93665.1; -; Genomic_DNA.
DR PIR; T01796; T01796.
DR RefSeq; NP_198079.1; NM_122609.3.
DR AlphaFoldDB; O04647; -.
DR SMR; O04647; -.
DR STRING; 3702.AT5G27270.1; -.
DR PaxDb; O04647; -.
DR PRIDE; O04647; -.
DR ProteomicsDB; 249280; -.
DR EnsemblPlants; AT5G27270.1; AT5G27270.1; AT5G27270.
DR GeneID; 832785; -.
DR Gramene; AT5G27270.1; AT5G27270.1; AT5G27270.
DR KEGG; ath:AT5G27270; -.
DR Araport; AT5G27270; -.
DR TAIR; locus:2181286; AT5G27270.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_4_1; -.
DR InParanoid; O04647; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; O04647; -.
DR PRO; PR:O04647; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; O04647; baseline and differential.
DR Genevisible; O04647; AT.
DR GO; GO:0009570; C:chloroplast stroma; IDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0010239; P:chloroplast mRNA processing; IMP:TAIR.
DR GO; GO:0000373; P:Group II intron splicing; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 7.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF13041; PPR_2; 2.
DR Pfam; PF13812; PPR_3; 1.
DR Pfam; PF17177; PPR_long; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 10.
DR PROSITE; PS51375; PPR; 22.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..1038
FT /note="Pentatricopeptide repeat-containing protein
FT At5g27270"
FT /id="PRO_0000363536"
FT REPEAT 187..221
FT /note="PPR 1"
FT REPEAT 222..256
FT /note="PPR 2"
FT REPEAT 257..291
FT /note="PPR 3"
FT REPEAT 292..326
FT /note="PPR 4"
FT REPEAT 327..361
FT /note="PPR 5"
FT REPEAT 362..396
FT /note="PPR 6"
FT REPEAT 397..431
FT /note="PPR 7"
FT REPEAT 432..466
FT /note="PPR 8"
FT REPEAT 467..501
FT /note="PPR 9"
FT REPEAT 502..535
FT /note="PPR 10"
FT REPEAT 536..570
FT /note="PPR 11"
FT REPEAT 601..631
FT /note="PPR 12"
FT REPEAT 634..668
FT /note="PPR 13"
FT REPEAT 669..699
FT /note="PPR 14"
FT REPEAT 703..737
FT /note="PPR 15"
FT REPEAT 738..772
FT /note="PPR 16"
FT REPEAT 773..807
FT /note="PPR 17"
FT REPEAT 808..842
FT /note="PPR 18"
FT REPEAT 843..877
FT /note="PPR 19"
FT REPEAT 878..912
FT /note="PPR 20"
FT REPEAT 913..947
FT /note="PPR 21"
FT REPEAT 948..982
FT /note="PPR 22"
FT REPEAT 983..1017
FT /note="PPR 23"
FT REGION 23..69
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 23..43
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 52..69
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1038 AA; 117451 MW; D67A41F703300B75 CRC64;
MKSDFLTSTT HFNPSIFLPK IPSRNSRISI KSSSSSSKVR PDPWSLSDGN PEKPKPRYER
PKHPLSDDDA RRIIKKKAQY LSTLRRNQGS QAMTPKWIKR TPEQMVQYLE DDRNGQMYGK
HVVAAIKTVR GLSQRRQGSD DMRFVMSSFV AKLSFRDMCV VLKEQRGWRQ VRDFFSWMKL
QLSYRPSVVV YTIVLRLYGQ VGKIKMAEET FLEMLEVGCE PDAVACGTML CTYARWGRHS
AMLTFYKAVQ ERRILLSTSV YNFMLSSLQK KSFHGKVIDL WLEMVEEGVP PNEFTYTLVV
SSYAKQGFKE EALKAFGEMK SLGFVPEEVT YSSVISLSVK AGDWEKAIGL YEDMRSQGIV
PSNYTCATML SLYYKTENYP KALSLFADME RNKIPADEVI RGLIIRIYGK LGLFHDAQSM
FEETERLNLL ADEKTYLAMS QVHLNSGNVV KALDVIEMMK TRDIPLSRFA YIVMLQCYAK
IQNVDCAEEA FRALSKTGLP DASSCNDMLN LYTRLNLGEK AKGFIKQIMV DQVHFDIELY
KTAMRVYCKE GMVAEAQDLI VKMGREARVK DNRFVQTLAE SMHIVNKHDK HEAVLNVSQL
DVMALGLMLN LRLKEGNLNE TKAILNLMFK TDLGSSAVNR VISSFVREGD VSKAEMIADI
IIRLGLRMEE ETIATLIAVY GRQHKLKEAK RLYLAAGESK TPGKSVIRSM IDAYVRCGWL
EDAYGLFMES AEKGCDPGAV TISILVNALT NRGKHREAEH ISRTCLEKNI ELDTVGYNTL
IKAMLEAGKL QCASEIYERM HTSGVPCSIQ TYNTMISVYG RGLQLDKAIE IFSNARRSGL
YLDEKIYTNM IMHYGKGGKM SEALSLFSEM QKKGIKPGTP SYNMMVKICA TSRLHHEVDE
LLQAMERNGR CTDLSTYLTL IQVYAESSQF AEAEKTITLV KEKGIPLSHS HFSSLLSALV
KAGMMEEAER TYCKMSEAGI SPDSACKRTI LKGYMTCGDA EKGILFYEKM IRSSVEDDRF
VSSVVEDLYK AVGKEQDV
