PP400_ARATH
ID PP400_ARATH Reviewed; 491 AA.
AC Q3E911;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 08-NOV-2005, sequence version 1.
DT 25-MAY-2022, entry version 92.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g27460;
GN OrderedLocusNames=At5g27460; ORFNames=F21A20.170;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 10-486.
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007123; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED93691.1; -; Genomic_DNA.
DR EMBL; BX829458; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_198098.1; NM_122628.3.
DR AlphaFoldDB; Q3E911; -.
DR SMR; Q3E911; -.
DR STRING; 3702.AT5G27460.1; -.
DR PaxDb; Q3E911; -.
DR PRIDE; Q3E911; -.
DR ProteomicsDB; 249281; -.
DR EnsemblPlants; AT5G27460.1; AT5G27460.1; AT5G27460.
DR GeneID; 832805; -.
DR Gramene; AT5G27460.1; AT5G27460.1; AT5G27460.
DR KEGG; ath:AT5G27460; -.
DR Araport; AT5G27460; -.
DR TAIR; locus:2146390; AT5G27460.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_019802_3_1_1; -.
DR InParanoid; Q3E911; -.
DR OMA; LNWMETQ; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q3E911; -.
DR PRO; PR:Q3E911; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q3E911; baseline and differential.
DR Genevisible; Q3E911; AT.
DR GO; GO:0005739; C:mitochondrion; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13812; PPR_3; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 1.
DR PROSITE; PS51375; PPR; 7.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..491
FT /note="Pentatricopeptide repeat-containing protein
FT At5g27460"
FT /id="PRO_0000363537"
FT REPEAT 69..99
FT /note="PPR 1"
FT REPEAT 105..139
FT /note="PPR 2"
FT REPEAT 142..176
FT /note="PPR 3"
FT REPEAT 177..211
FT /note="PPR 4"
FT REPEAT 212..246
FT /note="PPR 5"
FT REPEAT 248..278
FT /note="PPR 6"
FT REPEAT 283..313
FT /note="PPR 7"
FT REPEAT 318..348
FT /note="PPR 8"
FT REPEAT 353..387
FT /note="PPR 9"
FT REPEAT 388..426
FT /note="PPR 10"
FT CONFLICT 431
FT /note="V -> L (in Ref. 3; BX829458)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 491 AA; 56201 MW; 7B155BEB10D5722A CRC64;
MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE
RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK DIEFSVYDIA LRLDLIIKTH
GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP
FNEMMKLYEA SGQYEKVVMV VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV
GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL
LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV KCENMEKAID AMHQVFVLMR
RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY
DIYEMMKLDK L
