PP401_ARATH
ID PP401_ARATH Reviewed; 766 AA.
AC Q9LKU8; Q8LFD9;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g28460;
GN OrderedLocusNames=At5g28460; ORFNames=F21B23.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AF262038; AAF88002.1; -; Genomic_DNA.
DR EMBL; CP002688; AED93801.1; -; Genomic_DNA.
DR EMBL; AY052227; AAK97697.1; -; mRNA.
DR EMBL; BT002639; AAO11555.1; -; mRNA.
DR EMBL; AY084904; AAM61467.1; -; mRNA.
DR RefSeq; NP_680234.1; NM_147929.4.
DR AlphaFoldDB; Q9LKU8; -.
DR SMR; Q9LKU8; -.
DR iPTMnet; Q9LKU8; -.
DR PaxDb; Q9LKU8; -.
DR PRIDE; Q9LKU8; -.
DR EnsemblPlants; AT5G28460.1; AT5G28460.1; AT5G28460.
DR GeneID; 832933; -.
DR Gramene; AT5G28460.1; AT5G28460.1; AT5G28460.
DR KEGG; ath:AT5G28460; -.
DR Araport; AT5G28460; -.
DR TAIR; locus:2146554; AT5G28460.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9LKU8; -.
DR OMA; STHIRNI; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9LKU8; -.
DR PRO; PR:Q9LKU8; -.
DR Proteomes; UP000006548; Chromosome 5.
DR Genevisible; Q9LKU8; AT.
DR Gene3D; 1.25.40.10; -; 7.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 4.
DR TIGRFAMs; TIGR00756; PPR; 11.
DR PROSITE; PS51375; PPR; 16.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..766
FT /note="Pentatricopeptide repeat-containing protein
FT At5g28460"
FT /id="PRO_0000363538"
FT REPEAT 151..181
FT /note="PPR 1"
FT REPEAT 184..218
FT /note="PPR 2"
FT REPEAT 221..257
FT /note="PPR 3"
FT REPEAT 258..292
FT /note="PPR 4"
FT REPEAT 293..327
FT /note="PPR 5"
FT REPEAT 328..358
FT /note="PPR 6"
FT REPEAT 369..404
FT /note="PPR 7"
FT REPEAT 405..439
FT /note="PPR 8"
FT REPEAT 440..474
FT /note="PPR 9"
FT REPEAT 475..509
FT /note="PPR 10"
FT REPEAT 510..544
FT /note="PPR 11"
FT REPEAT 545..579
FT /note="PPR 12"
FT REPEAT 580..614
FT /note="PPR 13"
FT REPEAT 615..650
FT /note="PPR 14"
FT REPEAT 651..685
FT /note="PPR 15"
FT REPEAT 686..720
FT /note="PPR 16"
FT CONFLICT 152
FT /note="I -> V (in Ref. 4; AAM61467)"
FT /evidence="ECO:0000305"
FT CONFLICT 235
FT /note="E -> G (in Ref. 4; AAM61467)"
FT /evidence="ECO:0000305"
FT CONFLICT 277
FT /note="T -> A (in Ref. 4; AAM61467)"
FT /evidence="ECO:0000305"
FT CONFLICT 340
FT /note="C -> S (in Ref. 4; AAM61467)"
FT /evidence="ECO:0000305"
FT CONFLICT 420
FT /note="G -> V (in Ref. 4; AAM61467)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 766 AA; 86966 MW; 975DA4F6AE5AF42D CRC64;
MSIMLSISRR QNSYILLNHS RFLRRFSYDV DPRPEIKSES QEFVVVKFVK TLQNTPQHDW
ASSESLSALV VSSSSASPLV FSQITRRLGS YSLAISFFEY LDAKSQSLKR REESLSLALQ
SVIEFAGSEP DPRDKLLRLY EIAKEKNIPL TIVATKLLIR WFGRMGMVNQ SVLVYERLDS
NMKNSQVRNV VVDVLLRNGL VDDAFKVLDE MLQKESVFPP NRITADIVLH EVWKERLLTE
EKIIALISRF SSHGVSPNSV WLTRFISSLC KNARANTAWD ILSDLMKNKT PLEAPPFNAL
LSCLGRNMDI SRMNDLVLKM DEVKIRPDVV TLGILINTLC KSRRVDEALE VFEQMRGKRT
DDGNVIKADS IHFNTLIDGL CKVGRLKEAE ELLVRMKLEE RCVPNAVTYN CLIDGYCRAG
KLETAKEVVS RMKEDEIKPN VVTVNTIVGG MCRHHGLNMA VVFFMDMEKE GVKGNVVTYM
TLIHACCSVS NVEKAMYWYE KMLEAGCSPD AKIYYALISG LCQVRRDHDA IRVVEKLKEG
GFSLDLLAYN MLIGLFCDKN NAEKVYEMLT DMEKEGKKPD SITYNTLISF FGKHKDFESV
ERMMEQMRED GLDPTVTTYG AVIDAYCSVG ELDEALKLFK DMGLHSKVNP NTVIYNILIN
AFSKLGNFGQ ALSLKEEMKM KMVRPNVETY NALFKCLNEK TQGETLLKLM DEMVEQSCEP
NQITMEILME RLSGSDELVK LRKFMQGYSV ASPTEKASPF DVFSLG
