PP405_ARATH
ID PP405_ARATH Reviewed; 677 AA.
AC Q9FLZ9;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 108.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g39350;
GN Name=PCMP-E16; OrderedLocusNames=At5g39350; ORFNames=MUL8.30;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9628582; DOI=10.1093/dnares/5.1.41;
RA Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence
RT features of the regions of 1,456,315 bp covered by nineteen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:41-54(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB009054; BAB11009.1; -; Genomic_DNA.
DR EMBL; CP002688; AED94423.1; -; Genomic_DNA.
DR RefSeq; NP_198751.1; NM_123297.2.
DR AlphaFoldDB; Q9FLZ9; -.
DR SMR; Q9FLZ9; -.
DR PaxDb; Q9FLZ9; -.
DR PRIDE; Q9FLZ9; -.
DR ProteomicsDB; 249286; -.
DR EnsemblPlants; AT5G39350.1; AT5G39350.1; AT5G39350.
DR GeneID; 833931; -.
DR Gramene; AT5G39350.1; AT5G39350.1; AT5G39350.
DR KEGG; ath:AT5G39350; -.
DR Araport; AT5G39350; -.
DR TAIR; locus:2175653; AT5G39350.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_1_1; -.
DR InParanoid; Q9FLZ9; -.
DR OMA; SGKHAKC; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FLZ9; -.
DR PRO; PR:Q9FLZ9; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FLZ9; baseline and differential.
DR Genevisible; Q9FLZ9; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 4.
DR SUPFAM; SSF48452; SSF48452; 2.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 15.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..677
FT /note="Pentatricopeptide repeat-containing protein
FT At5g39350"
FT /id="PRO_0000363542"
FT REPEAT 48..78
FT /note="PPR 1"
FT REPEAT 79..113
FT /note="PPR 2"
FT REPEAT 116..146
FT /note="PPR 3"
FT REPEAT 151..181
FT /note="PPR 4"
FT REPEAT 182..216
FT /note="PPR 5"
FT REPEAT 217..251
FT /note="PPR 6"
FT REPEAT 252..282
FT /note="PPR 7"
FT REPEAT 283..317
FT /note="PPR 8"
FT REPEAT 318..352
FT /note="PPR 9"
FT REPEAT 353..383
FT /note="PPR 10"
FT REPEAT 384..418
FT /note="PPR 11"
FT REPEAT 419..453
FT /note="PPR 12"
FT REPEAT 454..488
FT /note="PPR 13"
FT REPEAT 489..523
FT /note="PPR 14"
FT REPEAT 524..554
FT /note="PPR 15"
FT REPEAT 560..590
FT /note="PPR 16"
FT REGION 595..670
FT /note="Type E motif"
SQ SEQUENCE 677 AA; 75960 MW; A54943DD4E13BF14 CRC64;
MSEVLRRANN ALSSVKQYQS LLNHFAATQS ISKTKALHCH VITGGRVSGH ILSTLSVTYA
LCGHITYARK LFEEMPQSSL LSYNIVIRMY VREGLYHDAI SVFIRMVSEG VKCVPDGYTY
PFVAKAAGEL KSMKLGLVVH GRILRSWFGR DKYVQNALLA MYMNFGKVEM ARDVFDVMKN
RDVISWNTMI SGYYRNGYMN DALMMFDWMV NESVDLDHAT IVSMLPVCGH LKDLEMGRNV
HKLVEEKRLG DKIEVKNALV NMYLKCGRMD EARFVFDRME RRDVITWTCM INGYTEDGDV
ENALELCRLM QFEGVRPNAV TIASLVSVCG DALKVNDGKC LHGWAVRQQV YSDIIIETSL
ISMYAKCKRV DLCFRVFSGA SKYHTGPWSA IIAGCVQNEL VSDALGLFKR MRREDVEPNI
ATLNSLLPAY AALADLRQAM NIHCYLTKTG FMSSLDAATG LVHVYSKCGT LESAHKIFNG
IQEKHKSKDV VLWGALISGY GMHGDGHNAL QVFMEMVRSG VTPNEITFTS ALNACSHSGL
VEEGLTLFRF MLEHYKTLAR SNHYTCIVDL LGRAGRLDEA YNLITTIPFE PTSTVWGALL
AACVTHENVQ LGEMAANKLF ELEPENTGNY VLLANIYAAL GRWKDMEKVR SMMENVGLRK
KPGHSTIEIR SNSVDTR
