PP406_ARATH
ID PP406_ARATH Reviewed; 710 AA.
AC Q9FK93;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 116.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g39680;
DE AltName: Full=Protein EMBRYO DEFECTIVE 2744;
GN Name=EMB2744; Synonyms=PCMP-H39; OrderedLocusNames=At5g39680;
GN ORFNames=MIJ24.150;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9734815; DOI=10.1093/dnares/5.3.203;
RA Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence
RT features of the regions of 1,367,185 bp covered by 19 physically assigned
RT P1 and TAC clones.";
RL DNA Res. 5:203-216(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [6]
RP ACETYLATION [LARGE SCALE ANALYSIS] AT SER-2, CLEAVAGE OF INITIATOR
RP METHIONINE [LARGE SCALE ANALYSIS], AND IDENTIFICATION BY MASS SPECTROMETRY
RP [LARGE SCALE ANALYSIS].
RX PubMed=22223895; DOI=10.1074/mcp.m111.015131;
RA Bienvenut W.V., Sumpton D., Martinez A., Lilla S., Espagne C., Meinnel T.,
RA Giglione C.;
RT "Comparative large-scale characterisation of plant vs. mammal proteins
RT reveals similar and idiosyncratic N-alpha acetylation features.";
RL Mol. Cell. Proteomics 11:M111.015131-M111.015131(2012).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BX832481; Type=Frameshift; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB012243; BAB08900.1; -; Genomic_DNA.
DR EMBL; CP002688; AED94463.1; -; Genomic_DNA.
DR EMBL; BX832481; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_198784.1; NM_123330.3.
DR AlphaFoldDB; Q9FK93; -.
DR SMR; Q9FK93; -.
DR iPTMnet; Q9FK93; -.
DR PaxDb; Q9FK93; -.
DR PRIDE; Q9FK93; -.
DR ProteomicsDB; 249287; -.
DR EnsemblPlants; AT5G39680.1; AT5G39680.1; AT5G39680.
DR GeneID; 833964; -.
DR Gramene; AT5G39680.1; AT5G39680.1; AT5G39680.
DR KEGG; ath:AT5G39680; -.
DR Araport; AT5G39680; -.
DR TAIR; locus:2164880; AT5G39680.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; Q9FK93; -.
DR OMA; WDIVAWR; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FK93; -.
DR PRO; PR:Q9FK93; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FK93; baseline and differential.
DR Genevisible; Q9FK93; AT.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 13.
PE 1: Evidence at protein level;
KW Acetylation; Reference proteome; Repeat.
FT INIT_MET 1
FT /note="Removed"
FT /evidence="ECO:0007744|PubMed:22223895"
FT CHAIN 2..710
FT /note="Pentatricopeptide repeat-containing protein
FT At5g39680"
FT /id="PRO_0000363543"
FT REPEAT 35..64
FT /note="PPR 1"
FT REPEAT 68..98
FT /note="PPR 2"
FT REPEAT 99..133
FT /note="PPR 3"
FT REPEAT 135..169
FT /note="PPR 4"
FT REPEAT 170..200
FT /note="PPR 5"
FT REPEAT 201..235
FT /note="PPR 6"
FT REPEAT 236..270
FT /note="PPR 7"
FT REPEAT 271..301
FT /note="PPR 8"
FT REPEAT 302..336
FT /note="PPR 9"
FT REPEAT 337..371
FT /note="PPR 10"
FT REPEAT 372..402
FT /note="PPR 11"
FT REPEAT 403..437
FT /note="PPR 12"
FT REPEAT 438..473
FT /note="PPR 13"
FT REPEAT 474..504
FT /note="PPR 14"
FT REGION 509..584
FT /note="Type E motif"
FT REGION 585..615
FT /note="Type E(+) motif"
FT REGION 616..710
FT /note="Type DYW motif"
FT MOD_RES 2
FT /note="N-acetylserine"
FT /evidence="ECO:0007744|PubMed:22223895"
SQ SEQUENCE 710 AA; 80844 MW; 78931261D23D29FE CRC64;
MSALSVIEQR LLKWDKLASL VPKSKKTPFP IDRLNELLKV CANSSYLRIG ESIHAHLIVT
NQSSRAEDAY QINSLINLYV KCRETVRARK LFDLMPERNV VSWCAMMKGY QNSGFDFEVL
KLFKSMFFSG ESRPNEFVAT VVFKSCSNSG RIEEGKQFHG CFLKYGLISH EFVRNTLVYM
YSLCSGNGEA IRVLDDLPYC DLSVFSSALS GYLECGAFKE GLDVLRKTAN EDFVWNNLTY
LSSLRLFSNL RDLNLALQVH SRMVRFGFNA EVEACGALIN MYGKCGKVLY AQRVFDDTHA
QNIFLNTTIM DAYFQDKSFE EALNLFSKMD TKEVPPNEYT FAILLNSIAE LSLLKQGDLL
HGLVLKSGYR NHVMVGNALV NMYAKSGSIE DARKAFSGMT FRDIVTWNTM ISGCSHHGLG
REALEAFDRM IFTGEIPNRI TFIGVLQACS HIGFVEQGLH YFNQLMKKFD VQPDIQHYTC
IVGLLSKAGM FKDAEDFMRT APIEWDVVAW RTLLNACYVR RNYRLGKKVA EYAIEKYPND
SGVYVLLSNI HAKSREWEGV AKVRSLMNNR GVKKEPGVSW IGIRNQTHVF LAEDNQHPEI
TLIYAKVKEV MSKIKPLGYS PDVAGAFHDV DEEQREDNLS YHSEKLAVAY GLIKTPEKSP
LYVTKNVRIC DDCHSAIKLI SKISKRYIVI RDSNRFHHFL DGQCSCCDYW
