PP407_ARATH
ID PP407_ARATH Reviewed; 747 AA.
AC Q9FIX3;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 111.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g39710;
DE AltName: Full=Protein EMBRYO DEFECTIVE 2745;
GN Name=EMB2745; OrderedLocusNames=At5g39710; ORFNames=MIJ24.190;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9872454; DOI=10.1093/dnares/5.5.297;
RA Nakamura Y., Sato S., Asamizu E., Kaneko T., Kotani H., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VII. Sequence
RT features of the regions of 1,013,767 bp covered by sixteen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:297-308(1998).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9734815; DOI=10.1093/dnares/5.3.203;
RA Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence
RT features of the regions of 1,367,185 bp covered by 19 physically assigned
RT P1 and TAC clones.";
RL DNA Res. 5:203-216(1998).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB016876; BAB11377.1; -; Genomic_DNA.
DR EMBL; AB012243; BAB11377.1; JOINED; Genomic_DNA.
DR EMBL; CP002688; AED94466.1; -; Genomic_DNA.
DR RefSeq; NP_198787.1; NM_123333.2.
DR AlphaFoldDB; Q9FIX3; -.
DR SMR; Q9FIX3; -.
DR PaxDb; Q9FIX3; -.
DR PRIDE; Q9FIX3; -.
DR ProteomicsDB; 249288; -.
DR EnsemblPlants; AT5G39710.1; AT5G39710.1; AT5G39710.
DR GeneID; 833967; -.
DR Gramene; AT5G39710.1; AT5G39710.1; AT5G39710.
DR KEGG; ath:AT5G39710; -.
DR Araport; AT5G39710; -.
DR TAIR; locus:2164910; AT5G39710.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9FIX3; -.
DR OMA; FFDQMHV; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FIX3; -.
DR PRO; PR:Q9FIX3; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FIX3; baseline and differential.
DR Genevisible; Q9FIX3; AT.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF12854; PPR_1; 3.
DR Pfam; PF13041; PPR_2; 5.
DR TIGRFAMs; TIGR00756; PPR; 12.
DR PROSITE; PS51375; PPR; 16.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..747
FT /note="Pentatricopeptide repeat-containing protein
FT At5g39710"
FT /id="PRO_0000363544"
FT REPEAT 133..167
FT /note="PPR 1"
FT REPEAT 168..203
FT /note="PPR 2"
FT REPEAT 204..238
FT /note="PPR 3"
FT REPEAT 239..273
FT /note="PPR 4"
FT REPEAT 274..308
FT /note="PPR 5"
FT REPEAT 309..343
FT /note="PPR 6"
FT REPEAT 344..378
FT /note="PPR 7"
FT REPEAT 379..413
FT /note="PPR 8"
FT REPEAT 414..448
FT /note="PPR 9"
FT REPEAT 449..483
FT /note="PPR 10"
FT REPEAT 484..518
FT /note="PPR 11"
FT REPEAT 519..553
FT /note="PPR 12"
FT REPEAT 554..588
FT /note="PPR 13"
FT REPEAT 604..638
FT /note="PPR 14"
FT REPEAT 639..673
FT /note="PPR 15"
SQ SEQUENCE 747 AA; 84274 MW; 1DAC020F52DD1E90 CRC64;
MFLTKTLIRR SLSTFASSPS DSLLADKALT FLKRHPYQLH HLSANFTPEA ASNLLLKSQN
DQALILKFLN WANPHQFFTL RCKCITLHIL TKFKLYKTAQ ILAEDVAAKT LDDEYASLVF
KSLQETYDLC YSTSSVFDLV VKSYSRLSLI DKALSIVHLA QAHGFMPGVL SYNAVLDATI
RSKRNISFAE NVFKEMLESQ VSPNVFTYNI LIRGFCFAGN IDVALTLFDK METKGCLPNV
VTYNTLIDGY CKLRKIDDGF KLLRSMALKG LEPNLISYNV VINGLCREGR MKEVSFVLTE
MNRRGYSLDE VTYNTLIKGY CKEGNFHQAL VMHAEMLRHG LTPSVITYTS LIHSMCKAGN
MNRAMEFLDQ MRVRGLCPNE RTYTTLVDGF SQKGYMNEAY RVLREMNDNG FSPSVVTYNA
LINGHCVTGK MEDAIAVLED MKEKGLSPDV VSYSTVLSGF CRSYDVDEAL RVKREMVEKG
IKPDTITYSS LIQGFCEQRR TKEACDLYEE MLRVGLPPDE FTYTALINAY CMEGDLEKAL
QLHNEMVEKG VLPDVVTYSV LINGLNKQSR TREAKRLLLK LFYEESVPSD VTYHTLIENC
SNIEFKSVVS LIKGFCMKGM MTEADQVFES MLGKNHKPDG TAYNIMIHGH CRAGDIRKAY
TLYKEMVKSG FLLHTVTVIA LVKALHKEGK VNELNSVIVH VLRSCELSEA EQAKVLVEIN
HREGNMDVVL DVLAEMAKDG FLPNGIS
