PP408_ARATH
ID PP408_ARATH Reviewed; 678 AA.
AC Q9FLD8; Q0WWU4;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 113.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g39980, chloroplastic;
DE Flags: Precursor;
GN OrderedLocusNames=At5g39980; ORFNames=MYH19.18;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9628582; DOI=10.1093/dnares/5.1.41;
RA Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence
RT features of the regions of 1,456,315 bp covered by nineteen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:41-54(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 133-678.
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB010077; BAB10222.1; -; Genomic_DNA.
DR EMBL; CP002688; AED94498.1; -; Genomic_DNA.
DR EMBL; AK226241; BAE98404.1; -; mRNA.
DR RefSeq; NP_198814.1; NM_123361.2.
DR AlphaFoldDB; Q9FLD8; -.
DR SMR; Q9FLD8; -.
DR iPTMnet; Q9FLD8; -.
DR PaxDb; Q9FLD8; -.
DR PRIDE; Q9FLD8; -.
DR ProteomicsDB; 249289; -.
DR EnsemblPlants; AT5G39980.1; AT5G39980.1; AT5G39980.
DR GeneID; 833995; -.
DR Gramene; AT5G39980.1; AT5G39980.1; AT5G39980.
DR KEGG; ath:AT5G39980; -.
DR Araport; AT5G39980; -.
DR TAIR; locus:2178037; AT5G39980.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_16_1; -.
DR InParanoid; Q9FLD8; -.
DR OMA; FWLQQME; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FLD8; -.
DR PRO; PR:Q9FLD8; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FLD8; baseline and differential.
DR Genevisible; Q9FLD8; AT.
DR GO; GO:0009507; C:chloroplast; IBA:GO_Central.
DR GO; GO:0009941; C:chloroplast envelope; IDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; IDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0009658; P:chloroplast organization; IMP:TAIR.
DR GO; GO:0031425; P:chloroplast RNA processing; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 3.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 10.
DR PROSITE; PS51375; PPR; 13.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..64
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 65..678
FT /note="Pentatricopeptide repeat-containing protein
FT At5g39980, chloroplastic"
FT /id="PRO_0000363545"
FT REPEAT 154..188
FT /note="PPR 1"
FT REPEAT 189..223
FT /note="PPR 2"
FT REPEAT 224..258
FT /note="PPR 3"
FT REPEAT 259..293
FT /note="PPR 4"
FT REPEAT 294..328
FT /note="PPR 5"
FT REPEAT 329..363
FT /note="PPR 6"
FT REPEAT 364..398
FT /note="PPR 7"
FT REPEAT 399..433
FT /note="PPR 8"
FT REPEAT 434..468
FT /note="PPR 9"
FT REPEAT 469..503
FT /note="PPR 10"
FT REPEAT 535..569
FT /note="PPR 11"
FT REPEAT 570..604
FT /note="PPR 12"
FT REPEAT 605..638
FT /note="PPR 13"
FT REPEAT 639..674
FT /note="PPR 14"
SQ SEQUENCE 678 AA; 78273 MW; A8D4709970679F45 CRC64;
MYIEIASSSS LSLPLLPLTR PHIYTSIPFS TIPEARQRNL IFTVSASSSS ESTQNKKVWR
KQPEKNTTSS FQALRKHRRY QRSAFLDHNV DMDELLASIH QTQNEKELFS LLSTYKDRQL
SIRFMVSLLS RENDWQRSLA LLDWVHEEAK YTPSVFAYNV VLRNVLRAKQ FDIAHGLFDE
MRQRALAPDR YTYSTLITSF GKEGMFDSAL SWLQKMEQDR VSGDLVLYSN LIELSRRLCD
YSKAISIFSR LKRSGITPDL VAYNSMINVY GKAKLFREAR LLIKEMNEAG VLPNTVSYST
LLSVYVENHK FLEALSVFAE MKEVNCALDL TTCNIMIDVY GQLDMVKEAD RLFWSLRKMD
IEPNVVSYNT ILRVYGEAEL FGEAIHLFRL MQRKDIEQNV VTYNTMIKIY GKTMEHEKAT
NLVQEMQSRG IEPNAITYST IISIWGKAGK LDRAATLFQK LRSSGVEIDQ VLYQTMIVAY
ERVGLMGHAK RLLHELKLPD NIPRETAITI LAKAGRTEEA TWVFRQAFES GEVKDISVFG
CMINLYSRNQ RYVNVIEVFE KMRTAGYFPD SNVIAMVLNA YGKQREFEKA DTVYREMQEE
GCVFPDEVHF QMLSLYSSKK DFEMVESLFQ RLESDPNVNS KELHLVVAAL YERADKLNDA
SRVMNRMRER GILKPFPG
