ID   PP409_ARATH             Reviewed;         610 AA.
AC   Q9FND8;
DT   10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT   01-MAR-2001, sequence version 1.
DT   03-AUG-2022, entry version 105.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At5g40400;
GN   OrderedLocusNames=At5g40400; ORFNames=MPO12.110;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=9405937; DOI=10.1093/dnares/4.4.291;
RA   Kotani H., Nakamura Y., Sato S., Kaneko T., Asamizu E., Miyajima N.,
RA   Tabata S.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence
RT   features of the regions of 1,044,062 bp covered by thirteen physically
RT   assigned P1 clones.";
RL   DNA Res. 4:291-300(1997).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA   Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA   Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA   Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA   Shinozaki K.;
RT   "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL   Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN   [4]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AB006702; BAB11596.1; -; Genomic_DNA.
DR   EMBL; CP002688; AED94543.1; -; Genomic_DNA.
DR   EMBL; AK227121; BAE99171.1; -; mRNA.
DR   RefSeq; NP_198856.2; NM_123404.3.
DR   AlphaFoldDB; Q9FND8; -.
DR   SMR; Q9FND8; -.
DR   iPTMnet; Q9FND8; -.
DR   PaxDb; Q9FND8; -.
DR   PRIDE; Q9FND8; -.
DR   EnsemblPlants; AT5G40400.1; AT5G40400.1; AT5G40400.
DR   GeneID; 834038; -.
DR   Gramene; AT5G40400.1; AT5G40400.1; AT5G40400.
DR   KEGG; ath:AT5G40400; -.
DR   Araport; AT5G40400; -.
DR   TAIR; locus:2170538; AT5G40400.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_49_12_1; -.
DR   InParanoid; Q9FND8; -.
DR   PhylomeDB; Q9FND8; -.
DR   PRO; PR:Q9FND8; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q9FND8; baseline and differential.
DR   Gene3D; 1.25.40.10; -; 5.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF01535; PPR; 4.
DR   Pfam; PF13041; PPR_2; 3.
DR   TIGRFAMs; TIGR00756; PPR; 8.
DR   PROSITE; PS51375; PPR; 13.
PE   2: Evidence at transcript level;
KW   Reference proteome; Repeat.
FT   CHAIN           1..610
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At5g40400"
FT                   /id="PRO_0000363546"
FT   REPEAT          165..199
FT                   /note="PPR 1"
FT   REPEAT          200..234
FT                   /note="PPR 2"
FT   REPEAT          235..269
FT                   /note="PPR 3"
FT   REPEAT          270..304
FT                   /note="PPR 4"
FT   REPEAT          305..339
FT                   /note="PPR 5"
FT   REPEAT          340..374
FT                   /note="PPR 6"
FT   REPEAT          375..409
FT                   /note="PPR 7"
FT   REPEAT          410..445
FT                   /note="PPR 8"
FT   REPEAT          446..480
FT                   /note="PPR 9"
FT   REPEAT          481..515
FT                   /note="PPR 10"
FT   REPEAT          516..546
FT                   /note="PPR 11"
FT   REPEAT          551..586
FT                   /note="PPR 12"
SQ   SEQUENCE   610 AA;  70188 MW;  0B996FED2B8CAB32 CRC64;
     MKNLVSNLRF FSSYSSSIVP RCSNIPKPIL NPLYNLLPQS QNPSKIVDVI CSTLNHSDYS
     VLLPNLRDEV KSLIPHLGYP EISRVLLRFQ SDASRAITFF KWVKFDLGKR PNVGNYCLLL
     HILVSSKKFP LAMQFLCELI ELTSKKEEVD VFRVLVSATD ECNWDPVVFD MLVKGYLKLG
     LVEEGFRVFR EVLDSGFSVS VVTCNHLLNG LLKLDLMEDC WQVYSVMCRV GIHPNTYTFN
     ILTNVFCNDS NFREVDDFLE KMEEEGFEPD LVTYNTLVSS YCRRGRLKEA FYLYKIMYRR
     RVVPDLVTYT SLIKGLCKDG RVREAHQTFH RMVDRGIKPD CMSYNTLIYA YCKEGMMQQS
     KKLLHEMLGN SVVPDRFTCK VIVEGFVREG RLLSAVNFVV ELRRLKVDIP FEVCDFLIVS
     LCQEGKPFAA KHLLDRIIEE EGHEAKPETY NNLIESLSRC DAIEEALVLK GKLKNQNQVL
     DAKTYRALIG CLCRIGRNRE AESLMAEMFD SEVKPDSFIC GALVYGYCKE LDFDKAERLL
     SLFAMEFRIF DPESYNSLVK AVCETGCGYK KALELQERMQ RLGFVPNRLT CKYLIQVLEQ
     PSLPNHLPEN