ID   PP410_ARATH             Reviewed;         612 AA.
AC   Q9FND7;
DT   10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT   01-MAR-2001, sequence version 1.
DT   25-MAY-2022, entry version 110.
DE   RecName: Full=Putative pentatricopeptide repeat-containing protein At5g40405;
GN   Name=PCMP-H14; OrderedLocusNames=At5g40405; ORFNames=MPO12;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=9405937; DOI=10.1093/dnares/4.4.291;
RA   Kotani H., Nakamura Y., Sato S., Kaneko T., Asamizu E., Miyajima N.,
RA   Tabata S.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence
RT   features of the regions of 1,044,062 bp covered by thirteen physically
RT   assigned P1 clones.";
RL   DNA Res. 4:291-300(1997).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   GENE FAMILY.
RX   PubMed=10809006; DOI=10.1023/a:1006352315928;
RA   Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT   "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT   unique to plants.";
RL   Plant Mol. Biol. 42:603-613(2000).
RN   [4]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AB006702; BAB11597.1; -; Genomic_DNA.
DR   EMBL; CP002688; AED94544.1; -; Genomic_DNA.
DR   EMBL; CP002688; ANM70895.1; -; Genomic_DNA.
DR   RefSeq; NP_001031987.1; NM_001036910.2.
DR   RefSeq; NP_001318712.1; NM_001344327.1.
DR   AlphaFoldDB; Q9FND7; -.
DR   SMR; Q9FND7; -.
DR   STRING; 3702.AT5G40405.1; -.
DR   iPTMnet; Q9FND7; -.
DR   PaxDb; Q9FND7; -.
DR   PRIDE; Q9FND7; -.
DR   ProteomicsDB; 249291; -.
DR   EnsemblPlants; AT5G40405.1; AT5G40405.1; AT5G40405.
DR   EnsemblPlants; AT5G40405.2; AT5G40405.2; AT5G40405.
DR   GeneID; 3771385; -.
DR   Gramene; AT5G40405.1; AT5G40405.1; AT5G40405.
DR   Gramene; AT5G40405.2; AT5G40405.2; AT5G40405.
DR   KEGG; ath:AT5G40405; -.
DR   Araport; AT5G40405; -.
DR   TAIR; locus:1009023396; AT5G40405.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_37_2_1; -.
DR   InParanoid; Q9FND7; -.
DR   OMA; NHGIDPW; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q9FND7; -.
DR   PRO; PR:Q9FND7; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q9FND7; baseline and differential.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   Gene3D; 1.25.40.10; -; 3.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF01535; PPR; 3.
DR   Pfam; PF13041; PPR_2; 2.
DR   SUPFAM; SSF48452; SSF48452; 1.
DR   TIGRFAMs; TIGR00756; PPR; 3.
DR   PROSITE; PS51375; PPR; 10.
PE   3: Inferred from homology;
KW   Reference proteome; Repeat.
FT   CHAIN           1..612
FT                   /note="Putative pentatricopeptide repeat-containing protein
FT                   At5g40405"
FT                   /id="PRO_0000363547"
FT   REPEAT          70..104
FT                   /note="PPR 1"
FT   REPEAT          107..141
FT                   /note="PPR 2"
FT   REPEAT          142..172
FT                   /note="PPR 3"
FT   REPEAT          173..203
FT                   /note="PPR 4"
FT   REPEAT          204..238
FT                   /note="PPR 5"
FT   REPEAT          239..273
FT                   /note="PPR 6"
FT   REPEAT          274..304
FT                   /note="PPR 7"
FT   REPEAT          305..339
FT                   /note="PPR 8"
FT   REPEAT          340..375
FT                   /note="PPR 9"
FT   REPEAT          376..410
FT                   /note="PPR 10"
FT   REGION          411..486
FT                   /note="Type E motif"
FT   REGION          487..517
FT                   /note="Type E(+) motif"
FT   REGION          518..612
FT                   /note="Type DYW motif"
SQ   SEQUENCE   612 AA;  68871 MW;  D31AC6D3D1F1C852 CRC64;
     MSRIGKHPAI ALLDSGITFK EVRQIHAKLY VDGTLKDDHL VGHFVKAVAL SDHKYLDYAN
     QILDRSEKPT LFALNSMIRA HCKSPVPEKS FDFYRRILSS GNDLKPDNYT VNFLVQACTG
     LRMRETGLQV HGMTIRRGFD NDPHVQTGLI SLYAELGCLD SCHKVFNSIP CPDFVCRTAM
     VTACARCGDV VFARKLFEGM PERDPIAWNA MISGYAQVGE SREALNVFHL MQLEGVKVNG
     VAMISVLSAC TQLGALDQGR WAHSYIERNK IKITVRLATT LVDLYAKCGD MEKAMEVFWG
     MEEKNVYTWS SALNGLAMNG FGEKCLELFS LMKQDGVTPN AVTFVSVLRG CSVVGFVDEG
     QRHFDSMRNE FGIEPQLEHY GCLVDLYARA GRLEDAVSII QQMPMKPHAA VWSSLLHASR
     MYKNLELGVL ASKKMLELET ANHGAYVLLS NIYADSNDWD NVSHVRQSMK SKGVRKQPGC
     SVMEVNGEVH EFFVGDKSHP KYTQIDAVWK DISRRLRLAG YKADTTPVMF DIDEEEKEDA
     LCLHSEKAAI AFGIMSLKED VPIRIVKNLR VCGDCHQVSM MISKIFNREI IVRDRNRFHH
     FKDGHCSCNG FW