ID   PP411_ARATH             Reviewed;         608 AA.
AC   Q9FND6;
DT   10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT   01-MAR-2001, sequence version 1.
DT   03-AUG-2022, entry version 109.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At5g40410, mitochondrial;
DE   Flags: Precursor;
GN   Name=PCMP-H15; OrderedLocusNames=At5g40410; ORFNames=MPO12.120, MPO12.16;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=9405937; DOI=10.1093/dnares/4.4.291;
RA   Kotani H., Nakamura Y., Sato S., Kaneko T., Asamizu E., Miyajima N.,
RA   Tabata S.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence
RT   features of the regions of 1,044,062 bp covered by thirteen physically
RT   assigned P1 clones.";
RL   DNA Res. 4:291-300(1997).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [4]
RP   GENE FAMILY.
RX   PubMed=10809006; DOI=10.1023/a:1006352315928;
RA   Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT   "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT   unique to plants.";
RL   Plant Mol. Biol. 42:603-613(2000).
RN   [5]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AB006702; BAB11598.1; -; Genomic_DNA.
DR   EMBL; CP002688; AED94545.1; -; Genomic_DNA.
DR   EMBL; AY062639; AAL32717.1; -; mRNA.
DR   EMBL; BT008372; AAP37731.1; -; mRNA.
DR   RefSeq; NP_198857.2; NM_123405.4.
DR   AlphaFoldDB; Q9FND6; -.
DR   SMR; Q9FND6; -.
DR   MetOSite; Q9FND6; -.
DR   PaxDb; Q9FND6; -.
DR   PRIDE; Q9FND6; -.
DR   ProteomicsDB; 249292; -.
DR   EnsemblPlants; AT5G40410.1; AT5G40410.1; AT5G40410.
DR   GeneID; 834039; -.
DR   Gramene; AT5G40410.1; AT5G40410.1; AT5G40410.
DR   KEGG; ath:AT5G40410; -.
DR   Araport; AT5G40410; -.
DR   TAIR; locus:2170548; AT5G40410.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_37_8_1; -.
DR   InParanoid; Q9FND6; -.
DR   OMA; DSRNYIM; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q9FND6; -.
DR   PRO; PR:Q9FND6; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q9FND6; baseline and differential.
DR   Genevisible; Q9FND6; AT.
DR   GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   Gene3D; 1.25.40.10; -; 3.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF01535; PPR; 4.
DR   Pfam; PF13041; PPR_2; 2.
DR   TIGRFAMs; TIGR00756; PPR; 4.
DR   PROSITE; PS51375; PPR; 11.
PE   2: Evidence at transcript level;
KW   Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT   TRANSIT         1..28
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           29..608
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At5g40410, mitochondrial"
FT                   /id="PRO_0000363548"
FT   REPEAT          30..64
FT                   /note="PPR 1"
FT   REPEAT          65..95
FT                   /note="PPR 2"
FT   REPEAT          96..130
FT                   /note="PPR 3"
FT   REPEAT          133..167
FT                   /note="PPR 4"
FT   REPEAT          168..198
FT                   /note="PPR 5"
FT   REPEAT          199..233
FT                   /note="PPR 6"
FT   REPEAT          234..268
FT                   /note="PPR 7"
FT   REPEAT          269..299
FT                   /note="PPR 8"
FT   REPEAT          300..334
FT                   /note="PPR 9"
FT   REPEAT          335..365
FT                   /note="PPR 10"
FT   REPEAT          371..401
FT                   /note="PPR 11"
FT   REGION          406..481
FT                   /note="Type E motif"
FT   REGION          482..512
FT                   /note="Type E(+) motif"
FT   REGION          514..608
FT                   /note="Type DYW motif"
SQ   SEQUENCE   608 AA;  68670 MW;  62AE84AA5F6C5520 CRC64;
     MIKANVYSCS KFRFLYRRRF LSQSSFVHSL DANVSSLIAA VKSCVSIELC RLLHCKVVKS
     VSYRHGFIGD QLVGCYLRLG HDVCAEKLFD EMPERDLVSW NSLISGYSGR GYLGKCFEVL
     SRMMISEVGF RPNEVTFLSM ISACVYGGSK EEGRCIHGLV MKFGVLEEVK VVNAFINWYG
     KTGDLTSSCK LFEDLSIKNL VSWNTMIVIH LQNGLAEKGL AYFNMSRRVG HEPDQATFLA
     VLRSCEDMGV VRLAQGIHGL IMFGGFSGNK CITTALLDLY SKLGRLEDSS TVFHEITSPD
     SMAWTAMLAA YATHGFGRDA IKHFELMVHY GISPDHVTFT HLLNACSHSG LVEEGKHYFE
     TMSKRYRIDP RLDHYSCMVD LLGRSGLLQD AYGLIKEMPM EPSSGVWGAL LGACRVYKDT
     QLGTKAAERL FELEPRDGRN YVMLSNIYSA SGLWKDASRI RNLMKQKGLV RASGCSYIEH
     GNKIHKFVVG DWSHPESEKI QKKLKEIRKK MKSEMGYKSK TEFVLHDVGE DVKEEMINQH
     SEKIAMAFGL LVVSPMEPII IRKNLRICGD CHETAKAISL IEKRRIIIRD SKRFHHFLDG
     SCSCSDYW