PP414_ARATH
ID PP414_ARATH Reviewed; 517 AA.
AC Q9FIH2; Q8GW82;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g42450, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E102; OrderedLocusNames=At5g42450; ORFNames=MDH9.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10048488; DOI=10.1093/dnares/5.6.379;
RA Asamizu E., Sato S., Kaneko T., Nakamura Y., Kotani H., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence
RT features of the regions of 1,081,958 bp covered by seventeen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:379-391(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 117-517.
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC43595.1; Type=Frameshift; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AB016888; BAB10486.1; -; Genomic_DNA.
DR EMBL; CP002688; AED94812.1; -; Genomic_DNA.
DR EMBL; AK119019; BAC43595.1; ALT_SEQ; mRNA.
DR RefSeq; NP_199060.3; NM_123610.4.
DR AlphaFoldDB; Q9FIH2; -.
DR SMR; Q9FIH2; -.
DR PaxDb; Q9FIH2; -.
DR PRIDE; Q9FIH2; -.
DR ProteomicsDB; 249295; -.
DR EnsemblPlants; AT5G42450.1; AT5G42450.1; AT5G42450.
DR GeneID; 834252; -.
DR Gramene; AT5G42450.1; AT5G42450.1; AT5G42450.
DR KEGG; ath:AT5G42450; -.
DR Araport; AT5G42450; -.
DR TAIR; locus:2162311; AT5G42450.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_2_1; -.
DR InParanoid; Q9FIH2; -.
DR OMA; FIHDLPF; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FIH2; -.
DR PRO; PR:Q9FIH2; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FIH2; baseline and differential.
DR Genevisible; Q9FIH2; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 9.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..23
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 24..517
FT /note="Pentatricopeptide repeat-containing protein
FT At5g42450, mitochondrial"
FT /id="PRO_0000363551"
FT REPEAT 57..91
FT /note="PPR 1"
FT REPEAT 92..126
FT /note="PPR 2"
FT REPEAT 127..157
FT /note="PPR 3"
FT REPEAT 158..188
FT /note="PPR 4"
FT REPEAT 189..223
FT /note="PPR 5"
FT REPEAT 225..259
FT /note="PPR 6"
FT REPEAT 261..291
FT /note="PPR 7"
FT REPEAT 294..329
FT /note="PPR 8"
FT REPEAT 368..398
FT /note="PPR 9"
FT REGION 403..478
FT /note="Type E motif"
FT REGION 479..509
FT /note="Type E(+) motif"
FT CONFLICT 242
FT /note="H -> R (in Ref. 3; BAC43595)"
FT /evidence="ECO:0000305"
FT CONFLICT 279
FT /note="E -> G (in Ref. 3; BAC43595)"
FT /evidence="ECO:0000305"
FT CONFLICT 383
FT /note="G -> D (in Ref. 3; BAC43595)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 517 AA; 58304 MW; 7F8AAB609CBC9988 CRC64;
MLHMILSQRV ILLRKYHSSA NALVTKSPNS IPELVKHIDS DLIRNAHKVF DEIPELDVIS
ATAVIGRFVK ESRHVEASQA FKRLLCLGIR PNEFTFGTVI GSSTTSRDVK LGKQLHCYAL
KMGLASNVFV GSAVLNCYVK LSTLTDARRC FDDTRDPNVV SITNLISGYL KKHEFEEALS
LFRAMPERSV VTWNAVIGGF SQTGRNEEAV NTFVDMLREG VVIPNESTFP CAITAISNIA
SHGAGKSIHA CAIKFLGKRF NVFVWNSLIS FYSKCGNMED SLLAFNKLEE EQRNIVSWNS
MIWGYAHNGR GEEAVAMFEK MVKDTNLRPN NVTILGVLFA CNHAGLIQEG YMYFNKAVND
YDDPNLLELE HYACMVDMLS RSGRFKEAEE LIKSMPLDPG IGFWKALLGG CQIHSNKRLA
KLAASKILEL DPRDVSSYVM LSNAYSAMEN WQNVSLIRRK MKETGLKRFT GCSWIEVRDQ
IRVFVNADKN NELKDEVYRM LALVSQHLEE NECWKDL
