PP415_ARATH
ID PP415_ARATH Reviewed; 460 AA.
AC Q9FG85;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 104.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g43790;
GN Name=PCMP-E30; OrderedLocusNames=At5g43790; ORFNames=MQD19.14;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RA Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. XI.";
RL Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 33-460.
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB026651; BAB11307.1; -; Genomic_DNA.
DR EMBL; CP002688; AED95010.1; -; Genomic_DNA.
DR EMBL; AY124001; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_199192.1; NM_123746.3.
DR AlphaFoldDB; Q9FG85; -.
DR SMR; Q9FG85; -.
DR PaxDb; Q9FG85; -.
DR PRIDE; Q9FG85; -.
DR ProteomicsDB; 249296; -.
DR EnsemblPlants; AT5G43790.1; AT5G43790.1; AT5G43790.
DR GeneID; 834401; -.
DR Gramene; AT5G43790.1; AT5G43790.1; AT5G43790.
DR KEGG; ath:AT5G43790; -.
DR Araport; AT5G43790; -.
DR TAIR; locus:2170877; AT5G43790.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_6_1; -.
DR InParanoid; Q9FG85; -.
DR OMA; FKACGSH; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FG85; -.
DR PRO; PR:Q9FG85; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FG85; baseline and differential.
DR Genevisible; Q9FG85; AT.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 5.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 9.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..460
FT /note="Pentatricopeptide repeat-containing protein
FT At5g43790"
FT /id="PRO_0000363552"
FT REPEAT 70..107
FT /note="PPR 1"
FT REPEAT 111..142
FT /note="PPR 2"
FT REPEAT 149..179
FT /note="PPR 3"
FT REPEAT 180..214
FT /note="PPR 4"
FT REPEAT 215..249
FT /note="PPR 5"
FT REPEAT 250..280
FT /note="PPR 6"
FT REPEAT 281..315
FT /note="PPR 7"
FT REPEAT 316..351
FT /note="PPR 8"
FT REPEAT 352..382
FT /note="PPR 9"
FT REGION 387..460
FT /note="Type E motif; degenerate"
SQ SEQUENCE 460 AA; 51644 MW; B956D35DFE01C3A1 CRC64;
MTSPSTSKNH RCLNLISKCK SLQNLKQIHA QIITIGLSHH TYPLSKLLHL SSTVCLSYAL
SILRQIPNPS VFLYNTLISS IVSNHNSTQT HLAFSLYDQI LSSRSNFVRP NEFTYPSLFK
ASGFDAQWHR HGRALHAHVL KFLEPVNHDR FVQAALVGFY ANCGKLREAR SLFERIREPD
LATWNTLLAA YANSEEIDSD EEVLLLFMRM QVRPNELSLV ALIKSCANLG EFVRGVWAHV
YVLKNNLTLN QFVGTSLIDL YSKCGCLSFA RKVFDEMSQR DVSCYNAMIR GLAVHGFGQE
GIELYKSLIS QGLVPDSATF VVTISACSHS GLVDEGLQIF NSMKAVYGIE PKVEHYGCLV
DLLGRSGRLE EAEECIKKMP VKPNATLWRS FLGSSQTHGD FERGEIALKH LLGLEFENSG
NYVLLSNIYA GVNRWTDVEK TRELMKDHRV NKSPGISTLN
