PP417_ARATH
ID PP417_ARATH Reviewed; 657 AA.
AC Q9FFG8;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g44230;
GN Name=PCMP-H17; OrderedLocusNames=At5g44230; ORFNames=MLN1.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9330910; DOI=10.1093/dnares/4.3.215;
RA Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M.,
RA Miyajima N., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence
RT features of the 1.6 Mb regions covered by twenty physically assigned P1
RT clones.";
RL DNA Res. 4:215-230(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB005239; BAB10990.1; -; Genomic_DNA.
DR EMBL; CP002688; AED95077.1; -; Genomic_DNA.
DR EMBL; DQ447037; ABE66219.1; -; mRNA.
DR RefSeq; NP_199236.1; NM_123790.2.
DR AlphaFoldDB; Q9FFG8; -.
DR SMR; Q9FFG8; -.
DR STRING; 3702.AT5G44230.1; -.
DR PaxDb; Q9FFG8; -.
DR PRIDE; Q9FFG8; -.
DR ProteomicsDB; 249298; -.
DR EnsemblPlants; AT5G44230.1; AT5G44230.1; AT5G44230.
DR GeneID; 834446; -.
DR Gramene; AT5G44230.1; AT5G44230.1; AT5G44230.
DR KEGG; ath:AT5G44230; -.
DR Araport; AT5G44230; -.
DR TAIR; locus:2167593; AT5G44230.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR InParanoid; Q9FFG8; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FFG8; -.
DR PRO; PR:Q9FFG8; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FFG8; baseline and differential.
DR Genevisible; Q9FFG8; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..657
FT /note="Pentatricopeptide repeat-containing protein
FT At5g44230"
FT /id="PRO_0000363554"
FT REPEAT 45..79
FT /note="PPR 1"
FT REPEAT 80..112
FT /note="PPR 2"
FT REPEAT 113..147
FT /note="PPR 3"
FT REPEAT 148..178
FT /note="PPR 4"
FT REPEAT 183..213
FT /note="PPR 5"
FT REPEAT 214..244
FT /note="PPR 6"
FT REPEAT 245..279
FT /note="PPR 7"
FT REPEAT 280..314
FT /note="PPR 8"
FT REPEAT 317..347
FT /note="PPR 9"
FT REPEAT 348..383
FT /note="PPR 10"
FT REPEAT 384..419
FT /note="PPR 11"
FT REPEAT 420..450
FT /note="PPR 12"
FT REGION 455..530
FT /note="Type E motif"
FT REGION 532..562
FT /note="Type E(+) motif"
FT REGION 563..657
FT /note="Type DYW motif"
SQ SEQUENCE 657 AA; 73670 MW; 2A6CE1D689BA0089 CRC64;
MTVAHSHRFS TAVNPINISL LSKQLLQLGR TSNNSGTFSE ISNQKELLVS SLISKLDDCI
NLNQIKQIHG HVLRKGLDQS CYILTKLIRT LTKLGVPMDP YARRVIEPVQ FRNPFLWTAV
IRGYAIEGKF DEAIAMYGCM RKEEITPVSF TFSALLKACG TMKDLNLGRQ FHAQTFRLRG
FCFVYVGNTM IDMYVKCESI DCARKVFDEM PERDVISWTE LIAAYARVGN MECAAELFES
LPTKDMVAWT AMVTGFAQNA KPQEALEYFD RMEKSGIRAD EVTVAGYISA CAQLGASKYA
DRAVQIAQKS GYSPSDHVVI GSALIDMYSK CGNVEEAVNV FMSMNNKNVF TYSSMILGLA
THGRAQEALH LFHYMVTQTE IKPNTVTFVG ALMACSHSGL VDQGRQVFDS MYQTFGVQPT
RDHYTCMVDL LGRTGRLQEA LELIKTMSVE PHGGVWGALL GACRIHNNPE IAEIAAEHLF
ELEPDIIGNY ILLSNVYASA GDWGGVLRVR KLIKEKGLKK TPAVSWVVDK NGQMHKFFPG
NLNHPMSNKI QDKLEELVER LTVLGYQPDL SSVPYDVSDN AKRLILIQHT EKLALAFSLL
TTNRDSTITI MKNLRMCLDC HKFMRLASEV TGKVIIMRDN MRFHHFRSGD CSCGDFW
