PP419_ARATH
ID PP419_ARATH Reviewed; 697 AA.
AC Q9FHF9;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g46460, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-H49; OrderedLocusNames=At5g46460; ORFNames=K11I1.5;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB019223; BAB10814.1; -; Genomic_DNA.
DR EMBL; CP002688; AED95388.1; -; Genomic_DNA.
DR RefSeq; NP_199458.1; NM_124016.2.
DR AlphaFoldDB; Q9FHF9; -.
DR SMR; Q9FHF9; -.
DR PaxDb; Q9FHF9; -.
DR PRIDE; Q9FHF9; -.
DR EnsemblPlants; AT5G46460.1; AT5G46460.1; AT5G46460.
DR GeneID; 834689; -.
DR Gramene; AT5G46460.1; AT5G46460.1; AT5G46460.
DR KEGG; ath:AT5G46460; -.
DR Araport; AT5G46460; -.
DR TAIR; locus:2151501; AT5G46460.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; Q9FHF9; -.
DR OMA; IYQKLEW; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FHF9; -.
DR PRO; PR:Q9FHF9; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FHF9; baseline and differential.
DR Genevisible; Q9FHF9; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 14.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..36
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 37..697
FT /note="Pentatricopeptide repeat-containing protein
FT At5g46460, mitochondrial"
FT /id="PRO_0000363556"
FT REPEAT 39..64
FT /note="PPR 1"
FT REPEAT 65..95
FT /note="PPR 2"
FT REPEAT 96..130
FT /note="PPR 3"
FT REPEAT 131..157
FT /note="PPR 4"
FT REPEAT 158..192
FT /note="PPR 5"
FT REPEAT 193..223
FT /note="PPR 6"
FT REPEAT 224..258
FT /note="PPR 7"
FT REPEAT 259..289
FT /note="PPR 8"
FT REPEAT 290..324
FT /note="PPR 9"
FT REPEAT 325..359
FT /note="PPR 10"
FT REPEAT 360..390
FT /note="PPR 11"
FT REPEAT 391..425
FT /note="PPR 12"
FT REPEAT 426..456
FT /note="PPR 13"
FT REPEAT 463..497
FT /note="PPR 14"
FT REGION 498..573
FT /note="Type E motif"
FT REGION 574..602
FT /note="Type E(+) motif"
FT REGION 603..697
FT /note="Type DYW motif"
SQ SEQUENCE 697 AA; 78877 MW; 40DCF636B64CC309 CRC64;
MWSRAIFQRF RFRAFSISHV IHGKCYRSFS VTVEFQNREV LICNHLLSRR IDEAREVFNQ
VPSPHVSLYT KMITGYTRSN RLVDALNLFD EMPVRDVVSW NSMISGCVEC GDMNTAVKLF
DEMPERSVVS WTAMVNGCFR SGKVDQAERL FYQMPVKDTA AWNSMVHGYL QFGKVDDALK
LFKQMPGKNV ISWTTMICGL DQNERSGEAL DLFKNMLRCC IKSTSRPFTC VITACANAPA
FHMGIQVHGL IIKLGFLYEE YVSASLITFY ANCKRIGDSR KVFDEKVHEQ VAVWTALLSG
YSLNKKHEDA LSIFSGMLRN SILPNQSTFA SGLNSCSALG TLDWGKEMHG VAVKLGLETD
AFVGNSLVVM YSDSGNVNDA VSVFIKIFKK SIVSWNSIIV GCAQHGRGKW AFVIFGQMIR
LNKEPDEITF TGLLSACSHC GFLEKGRKLF YYMSSGINHI DRKIQHYTCM VDILGRCGKL
KEAEELIERM VVKPNEMVWL ALLSACRMHS DVDRGEKAAA AIFNLDSKSS AAYVLLSNIY
ASAGRWSNVS KLRVKMKKNG IMKKPGSSWV VIRGKKHEFF SGDQPHCSRI YEKLEFLREK
LKELGYAPDY RSALHDVEDE QKEEMLWYHS ERLAIAFGLI NTVEGSAVTV MKNLRVCEDC
HTVIKLISGV VGREIVLRDP IRFHHFKNGT CSCGDYW
