PP421_ARATH
ID PP421_ARATH Reviewed; 468 AA.
AC Q56XR6; Q8LFY9; Q9FIQ7;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 2.
DT 03-AUG-2022, entry version 100.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g46680;
GN OrderedLocusNames=At5g46680; ORFNames=MZA15.9;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10048488; DOI=10.1093/dnares/5.6.379;
RA Asamizu E., Sato S., Kaneko T., Nakamura Y., Kotani H., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence
RT features of the regions of 1,081,958 bp covered by seventeen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:379-391(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAM67288.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=BAB08912.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB016882; BAB08912.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED95413.1; -; Genomic_DNA.
DR EMBL; AK221607; BAD95174.1; -; mRNA.
DR EMBL; AY084563; AAM67288.1; ALT_INIT; mRNA.
DR RefSeq; NP_568665.1; NM_124038.4.
DR AlphaFoldDB; Q56XR6; -.
DR SMR; Q56XR6; -.
DR iPTMnet; Q56XR6; -.
DR PaxDb; Q56XR6; -.
DR PRIDE; Q56XR6; -.
DR EnsemblPlants; AT5G46680.1; AT5G46680.1; AT5G46680.
DR GeneID; 834711; -.
DR Gramene; AT5G46680.1; AT5G46680.1; AT5G46680.
DR KEGG; ath:AT5G46680; -.
DR Araport; AT5G46680; -.
DR TAIR; locus:2178550; AT5G46680.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q56XR6; -.
DR OMA; YSTMVHS; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q56XR6; -.
DR PRO; PR:Q56XR6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q56XR6; baseline and differential.
DR Genevisible; Q56XR6; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 4.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..468
FT /note="Pentatricopeptide repeat-containing protein
FT At5g46680"
FT /id="PRO_0000363558"
FT REPEAT 12..46
FT /note="PPR 1"
FT REPEAT 47..81
FT /note="PPR 2"
FT REPEAT 82..116
FT /note="PPR 3"
FT REPEAT 117..152
FT /note="PPR 4"
FT REPEAT 153..183
FT /note="PPR 5"
FT REPEAT 187..221
FT /note="PPR 6"
FT REPEAT 222..256
FT /note="PPR 7"
FT REPEAT 257..291
FT /note="PPR 8"
FT REPEAT 293..327
FT /note="PPR 9"
FT REPEAT 328..362
FT /note="PPR 10"
FT REPEAT 363..393
FT /note="PPR 11"
FT REPEAT 394..428
FT /note="PPR 12"
FT CONFLICT 98
FT /note="M -> V (in Ref. 3; BAD95174)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 468 AA; 52506 MW; 83E5CAAF4E53FC05 CRC64;
MVRGLMKFPG ISTKLLNISV NSLCKFRNLE RAETLLIDGI RLGVLPDVIT YNTLIKGYTR
FIGIDEAYAV TRRMREAGIE PDVTTYNSLI SGAAKNLMLN RVLQLFDEML HSGLSPDMWS
YNTLMSCYFK LGRHGEAFKI LHEDIHLAGL VPGIDTYNIL LDALCKSGHT DNAIELFKHL
KSRVKPELMT YNILINGLCK SRRVGSVDWM MRELKKSGYT PNAVTYTTML KMYFKTKRIE
KGLQLFLKMK KEGYTFDGFA NCAVVSALIK TGRAEEAYEC MHELVRSGTR SQDIVSYNTL
LNLYFKDGNL DAVDDLLEEI EMKGLKPDDY THTIIVNGLL NIGNTGGAEK HLACIGEMGM
QPSVVTCNCL IDGLCKAGHV DRAMRLFASM EVRDEFTYTS VVHNLCKDGR LVCASKLLLS
CYNKGMKIPS SARRAVLSGI RETVSYQAAR KTHIKIKAAI ECNTLMYP
