PP425_ARATH
ID PP425_ARATH Reviewed; 646 AA.
AC Q9FI80;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g48910;
GN Name=PCMP-H38; OrderedLocusNames=At5g48910; ORFNames=K19E20.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10470850; DOI=10.1093/dnares/6.3.183;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Kotani H.,
RA Miyajima N., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. IX. Sequence
RT features of the regions of 1,011,550 bp covered by seventeen P1 and TAC
RT clones.";
RL DNA Res. 6:183-195(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB017061; BAB10314.1; -; Genomic_DNA.
DR EMBL; CP002688; AED95742.1; -; Genomic_DNA.
DR EMBL; AY056318; AAL07167.1; -; mRNA.
DR RefSeq; NP_199702.1; NM_124268.2.
DR AlphaFoldDB; Q9FI80; -.
DR SMR; Q9FI80; -.
DR STRING; 3702.AT5G48910.1; -.
DR PaxDb; Q9FI80; -.
DR PRIDE; Q9FI80; -.
DR ProteomicsDB; 249306; -.
DR EnsemblPlants; AT5G48910.1; AT5G48910.1; AT5G48910.
DR GeneID; 834949; -.
DR Gramene; AT5G48910.1; AT5G48910.1; AT5G48910.
DR KEGG; ath:AT5G48910; -.
DR Araport; AT5G48910; -.
DR TAIR; locus:2154389; AT5G48910.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR InParanoid; Q9FI80; -.
DR OMA; VHLYAEK; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FI80; -.
DR PRO; PR:Q9FI80; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FI80; baseline and differential.
DR Genevisible; Q9FI80; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 3.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..646
FT /note="Pentatricopeptide repeat-containing protein
FT At5g48910"
FT /id="PRO_0000363562"
FT REPEAT 54..88
FT /note="PPR 1"
FT REPEAT 89..126
FT /note="PPR 2"
FT REPEAT 127..161
FT /note="PPR 3"
FT REPEAT 162..197
FT /note="PPR 4"
FT REPEAT 207..237
FT /note="PPR 5"
FT REPEAT 238..272
FT /note="PPR 6"
FT REPEAT 273..307
FT /note="PPR 7"
FT REPEAT 308..338
FT /note="PPR 8"
FT REPEAT 339..373
FT /note="PPR 9"
FT REPEAT 374..409
FT /note="PPR 10"
FT REPEAT 410..440
FT /note="PPR 11"
FT REGION 1..24
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 445..520
FT /note="Type E motif"
FT REGION 521..551
FT /note="Type E(+) motif"
FT REGION 552..646
FT /note="Type DYW motif"
SQ SEQUENCE 646 AA; 73259 MW; B99DFA39E6B8A304 CRC64;
MNPTQTLFSP GGNSPASSPA SHPSSLFPQI NNCRTIRDLS QIHAVFIKSG QMRDTLAAAE
ILRFCATSDL HHRDLDYAHK IFNQMPQRNC FSWNTIIRGF SESDEDKALI AITLFYEMMS
DEFVEPNRFT FPSVLKACAK TGKIQEGKQI HGLALKYGFG GDEFVMSNLV RMYVMCGFMK
DARVLFYKNI IEKDMVVMTD RRKRDGEIVL WNVMIDGYMR LGDCKAARML FDKMRQRSVV
SWNTMISGYS LNGFFKDAVE VFREMKKGDI RPNYVTLVSV LPAISRLGSL ELGEWLHLYA
EDSGIRIDDV LGSALIDMYS KCGIIEKAIH VFERLPRENV ITWSAMINGF AIHGQAGDAI
DCFCKMRQAG VRPSDVAYIN LLTACSHGGL VEEGRRYFSQ MVSVDGLEPR IEHYGCMVDL
LGRSGLLDEA EEFILNMPIK PDDVIWKALL GACRMQGNVE MGKRVANILM DMVPHDSGAY
VALSNMYASQ GNWSEVSEMR LRMKEKDIRK DPGCSLIDID GVLHEFVVED DSHPKAKEIN
SMLVEISDKL RLAGYRPITT QVLLNLEEED KENVLHYHSE KIATAFGLIS TSPGKPIRIV
KNLRICEDCH SSIKLISKVY KRKITVRDRK RFHHFQDGSC SCMDYW
