PP426_ARATH
ID PP426_ARATH Reviewed; 723 AA.
AC Q9FGR7;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g50280, chloroplastic;
DE AltName: Full=Protein EMBRYO DEFECTIVE 1006;
DE Flags: Precursor;
GN Name=EMB1006; OrderedLocusNames=At5g50280; ORFNames=K6A12.14;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB024031; BAB09399.1; -; Genomic_DNA.
DR EMBL; CP002688; AED95921.1; -; Genomic_DNA.
DR RefSeq; NP_199839.1; NM_124407.2.
DR AlphaFoldDB; Q9FGR7; -.
DR SMR; Q9FGR7; -.
DR STRING; 3702.AT5G50280.1; -.
DR iPTMnet; Q9FGR7; -.
DR PaxDb; Q9FGR7; -.
DR PRIDE; Q9FGR7; -.
DR ProteomicsDB; 249307; -.
DR EnsemblPlants; AT5G50280.1; AT5G50280.1; AT5G50280.
DR GeneID; 835093; -.
DR Gramene; AT5G50280.1; AT5G50280.1; AT5G50280.
DR KEGG; ath:AT5G50280; -.
DR Araport; AT5G50280; -.
DR TAIR; locus:2157732; AT5G50280.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q9FGR7; -.
DR OMA; FFEWMGL; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FGR7; -.
DR PRO; PR:Q9FGR7; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FGR7; baseline and differential.
DR Genevisible; Q9FGR7; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 3.
DR Pfam; PF13812; PPR_3; 2.
DR TIGRFAMs; TIGR00756; PPR; 10.
DR PROSITE; PS51375; PPR; 11.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..44
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 45..723
FT /note="Pentatricopeptide repeat-containing protein
FT At5g50280, chloroplastic"
FT /id="PRO_0000363563"
FT REPEAT 272..306
FT /note="PPR 1"
FT REPEAT 307..342
FT /note="PPR 2"
FT REPEAT 343..377
FT /note="PPR 3"
FT REPEAT 378..412
FT /note="PPR 4"
FT REPEAT 413..447
FT /note="PPR 5"
FT REPEAT 448..483
FT /note="PPR 6"
FT REPEAT 484..518
FT /note="PPR 7"
FT REPEAT 519..553
FT /note="PPR 8"
FT REPEAT 554..588
FT /note="PPR 9"
FT REPEAT 589..623
FT /note="PPR 10"
FT REPEAT 624..658
FT /note="PPR 11"
FT REGION 70..97
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 700..723
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 80..96
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 723 AA; 82173 MW; D46372460A79154F CRC64;
MSMASSSLAT QSFFSSFPLS HRLHFPVPYL LLRSSFFRKP LSLSATSPSS SSSSPSIFLS
CFDDALPDKI QQPENSTINS EESECEEEDD EEGDDFTDPI LKFFKSRTLT SESTADPARE
SKFSLQKNRR TSWHLAPDFA DPETEIESKP EESVFVTNQQ TLGVHIPFES GVAREILELA
KNLKENQTLG EMLSGFERRV SDTECVEALV MMGESGFVKS CLYFYEWMSL QEPSLASPRA
CSVLFTLLGR ERMADYILLL LSNLPDKEEF RDVRLYNAAI SGLSASQRYD DAWEVYEAMD
KINVYPDNVT CAILITTLRK AGRSAKEVWE IFEKMSEKGV KWSQDVFGGL VKSFCDEGLK
EEALVIQTEM EKKGIRSNTI VYNTLMDAYN KSNHIEEVEG LFTEMRDKGL KPSAATYNIL
MDAYARRMQP DIVETLLREM EDLGLEPNVK SYTCLISAYG RTKKMSDMAA DAFLRMKKVG
LKPSSHSYTA LIHAYSVSGW HEKAYASFEE MCKEGIKPSV ETYTSVLDAF RRSGDTGKLM
EIWKLMLREK IKGTRITYNT LLDGFAKQGL YIEARDVVSE FSKMGLQPSV MTYNMLMNAY
ARGGQDAKLP QLLKEMAALN LKPDSITYST MIYAFVRVRD FKRAFFYHKM MVKSGQVPDP
RSYEKLRAIL EDKAKTKNRK DKTAILGIIN SKFGRVKAKT KGKKDEFWKY KTNRTTSPGR
HRS
