PP427_ARATH
ID PP427_ARATH Reviewed; 701 AA.
AC Q9FK33;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g50390, chloroplastic;
DE Flags: Precursor;
GN Name=PCMP-H58; OrderedLocusNames=At5g50390; ORFNames=MXI22.11;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9734815; DOI=10.1093/dnares/5.3.203;
RA Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence
RT features of the regions of 1,367,185 bp covered by 19 physically assigned
RT P1 and TAC clones.";
RL DNA Res. 5:203-216(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB012248; BAB09458.1; -; Genomic_DNA.
DR EMBL; CP002688; AED95938.1; -; Genomic_DNA.
DR RefSeq; NP_199850.1; NM_124421.2.
DR AlphaFoldDB; Q9FK33; -.
DR SMR; Q9FK33; -.
DR STRING; 3702.AT5G50390.1; -.
DR PaxDb; Q9FK33; -.
DR PRIDE; Q9FK33; -.
DR ProteomicsDB; 249308; -.
DR EnsemblPlants; AT5G50390.1; AT5G50390.1; AT5G50390.
DR GeneID; 835107; -.
DR Gramene; AT5G50390.1; AT5G50390.1; AT5G50390.
DR KEGG; ath:AT5G50390; -.
DR Araport; AT5G50390; -.
DR TAIR; locus:2177537; AT5G50390.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_8_1; -.
DR InParanoid; Q9FK33; -.
DR OMA; ACIIELF; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FK33; -.
DR PRO; PR:Q9FK33; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FK33; baseline and differential.
DR Genevisible; Q9FK33; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 12.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..47
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 48..701
FT /note="Pentatricopeptide repeat-containing protein
FT At5g50390, chloroplastic"
FT /id="PRO_0000363564"
FT REPEAT 86..116
FT /note="PPR 1"
FT REPEAT 122..156
FT /note="PPR 2"
FT REPEAT 157..187
FT /note="PPR 3"
FT REPEAT 188..218
FT /note="PPR 4"
FT REPEAT 223..257
FT /note="PPR 5"
FT REPEAT 258..288
FT /note="PPR 6"
FT REPEAT 289..323
FT /note="PPR 7"
FT REPEAT 324..358
FT /note="PPR 8"
FT REPEAT 359..389
FT /note="PPR 9"
FT REPEAT 390..424
FT /note="PPR 10"
FT REPEAT 425..460
FT /note="PPR 11"
FT REPEAT 461..491
FT /note="PPR 12"
FT REGION 496..571
FT /note="Type E motif"
FT REGION 572..606
FT /note="Type E(+) motif; degenerate"
FT REGION 607..701
FT /note="Type DYW motif"
SQ SEQUENCE 701 AA; 79765 MW; B45259E5892996EC CRC64;
MEIPLSRYQS IRLDEIRDSS SNPKVLTFPR KFSLRGRRWK NPFGRLSCSS VVQGLKPKPK
LKPEPIRIEV KESKDQILDD TQISKSGVTI CSQIEKLVLC NRFREAFELF EILEIRCSFK
VGVSTYDALV EACIRLKSIR CVKRVYGFMM SNGFEPEQYM MNRILLMHVK CGMIIDARRL
FDEIPERNLY SYYSIISGFV NFGNYVEAFE LFKMMWEELS DCETHTFAVM LRASAGLGSI
YVGKQLHVCA LKLGVVDNTF VSCGLIDMYS KCGDIEDARC AFECMPEKTT VAWNNVIAGY
ALHGYSEEAL CLLYDMRDSG VSIDQFTLSI MIRISTKLAK LELTKQAHAS LIRNGFESEI
VANTALVDFY SKWGRVDTAR YVFDKLPRKN IISWNALMGG YANHGRGTDA VKLFEKMIAA
NVAPNHVTFL AVLSACAYSG LSEQGWEIFL SMSEVHGIKP RAMHYACMIE LLGRDGLLDE
AIAFIRRAPL KTTVNMWAAL LNACRMQENL ELGRVVAEKL YGMGPEKLGN YVVMYNMYNS
MGKTAEAAGV LETLESKGLS MMPACTWVEV GDQTHSFLSG DRFDSYNETV KRQIYQKVDE
LMEEISEYGY SEEEQHLLPD VDEKEEERVG RYHSEKLAIA YGLVNTPEWN PLQITQNHRI
CKNCHKVVEF ISLVTGREMV VRDASRFHHF KEGKCSCGGY W
