ID   PP428_ARATH             Reviewed;         534 AA.
AC   Q9FI49;
DT   10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT   10-FEB-2009, sequence version 2.
DT   03-AUG-2022, entry version 111.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At5g50990;
GN   Name=PCMP-H59; OrderedLocusNames=At5g50990; ORFNames=K3K7.15;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10470850; DOI=10.1093/dnares/6.3.183;
RA   Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Kotani H.,
RA   Miyajima N., Tabata S.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 5. IX. Sequence
RT   features of the regions of 1,011,550 bp covered by seventeen P1 and TAC
RT   clones.";
RL   DNA Res. 6:183-195(1999).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   GENE FAMILY.
RX   PubMed=10809006; DOI=10.1023/a:1006352315928;
RA   Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT   "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT   unique to plants.";
RL   Plant Mol. Biol. 42:603-613(2000).
RN   [4]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA   Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA   Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=BAB08745.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC   -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC       URL="https://ppr.plantenergy.uwa.edu.au";
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DR   EMBL; AB017063; BAB08745.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; CP002688; AED96019.1; -; Genomic_DNA.
DR   RefSeq; NP_199912.2; NM_124478.3.
DR   AlphaFoldDB; Q9FI49; -.
DR   SMR; Q9FI49; -.
DR   PaxDb; Q9FI49; -.
DR   PRIDE; Q9FI49; -.
DR   ProteomicsDB; 249309; -.
DR   EnsemblPlants; AT5G50990.1; AT5G50990.1; AT5G50990.
DR   GeneID; 835172; -.
DR   Gramene; AT5G50990.1; AT5G50990.1; AT5G50990.
DR   KEGG; ath:AT5G50990; -.
DR   Araport; AT5G50990; -.
DR   TAIR; locus:2157368; AT5G50990.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_37_1_1; -.
DR   InParanoid; Q9FI49; -.
DR   OMA; YRQTKLG; -.
DR   OrthoDB; 1344243at2759; -.
DR   PhylomeDB; Q9FI49; -.
DR   PRO; PR:Q9FI49; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q9FI49; baseline and differential.
DR   Genevisible; Q9FI49; AT.
DR   GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; -; 2.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR045215; PPR_prot_plant.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   PANTHER; PTHR24015; PTHR24015; 1.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF01535; PPR; 1.
DR   Pfam; PF13041; PPR_2; 2.
DR   TIGRFAMs; TIGR00756; PPR; 3.
DR   PROSITE; PS51375; PPR; 7.
PE   2: Evidence at transcript level;
KW   Reference proteome; Repeat.
FT   CHAIN           1..534
FT                   /note="Pentatricopeptide repeat-containing protein
FT                   At5g50990"
FT                   /id="PRO_0000363565"
FT   REPEAT          128..158
FT                   /note="PPR 1"
FT   REPEAT          164..198
FT                   /note="PPR 2"
FT   REPEAT          199..229
FT                   /note="PPR 3"
FT   REPEAT          230..264
FT                   /note="PPR 4"
FT   REPEAT          265..295
FT                   /note="PPR 5"
FT   REPEAT          301..331
FT                   /note="PPR 6"
FT   REGION          336..408
FT                   /note="Type E motif"
FT   REGION          409..439
FT                   /note="Type E(+) motif"
FT   REGION          440..534
FT                   /note="Type DYW motif"
SQ   SEQUENCE   534 AA;  60036 MW;  5145652C8DD97F23 CRC64;
     MQRISINVSG IRRFCITSLS SSSASNLTDH GMLKQVLESC KAPSNSKCVL QAHAQIFKLG
     YGTYPSLLVS TVAAYRRCNR SYLARRLLLW FLSLSPGVCN INLIIESLMK IGESGLAKKV
     LRNASDQNVI TWNLMIGGYV RNVQYEEALK ALKNMLSFTD IKPNKFSFAS SLAACARLGD
     LHHAKWVHSL MIDSGIELNA ILSSALVDVY AKCGDIGTSR EVFYSVKRND VSIWNAMITG
     FATHGLATEA IRVFSEMEAE HVSPDSITFL GLLTTCSHCG LLEEGKEYFG LMSRRFSIQP
     KLEHYGAMVD LLGRAGRVKE AYELIESMPI EPDVVIWRSL LSSSRTYKNP ELGEIAIQNL
     SKAKSGDYVL LSNIYSSTKK WESAQKVREL MSKEGIRKAK GKSWLEFGGM IHRFKAGDTS
     HIETKAIYKV LEGLIQKTKS QGFVSDTDLV LMDVSEEEKE ENLNYHSEKL ALAYVILKSS
     PGTEIRIQKN IRMCSDCHNW IKAVSKLLNR VIIMRDRIRF HRFEDGLCSC RDYW