PP430_ARATH
ID PP430_ARATH Reviewed; 893 AA.
AC Q9FLX6;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g52850, chloroplastic;
DE Flags: Precursor;
GN Name=PCMP-H31; OrderedLocusNames=At5g52850; ORFNames=MXC20.7;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9628582; DOI=10.1093/dnares/5.1.41;
RA Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence
RT features of the regions of 1,456,315 bp covered by nineteen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:41-54(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB009055; BAB10433.1; -; Genomic_DNA.
DR EMBL; CP002688; AED96268.1; -; Genomic_DNA.
DR RefSeq; NP_200097.1; NM_124663.1.
DR AlphaFoldDB; Q9FLX6; -.
DR SMR; Q9FLX6; -.
DR PaxDb; Q9FLX6; -.
DR PRIDE; Q9FLX6; -.
DR ProteomicsDB; 249311; -.
DR EnsemblPlants; AT5G52850.1; AT5G52850.1; AT5G52850.
DR GeneID; 835362; -.
DR Gramene; AT5G52850.1; AT5G52850.1; AT5G52850.
DR KEGG; ath:AT5G52850; -.
DR Araport; AT5G52850; -.
DR TAIR; locus:2176927; AT5G52850.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; Q9FLX6; -.
DR OMA; LALYPCM; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FLX6; -.
DR PRO; PR:Q9FLX6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FLX6; baseline and differential.
DR Genevisible; Q9FLX6; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 5.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 18.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..?
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN ?..893
FT /note="Pentatricopeptide repeat-containing protein
FT At5g52850, chloroplastic"
FT /id="PRO_0000363567"
FT REPEAT 57..87
FT /note="PPR 1"
FT REPEAT 88..122
FT /note="PPR 2"
FT REPEAT 123..157
FT /note="PPR 3"
FT REPEAT 158..188
FT /note="PPR 4"
FT REPEAT 189..223
FT /note="PPR 5"
FT REPEAT 224..257
FT /note="PPR 6"
FT REPEAT 258..288
FT /note="PPR 7"
FT REPEAT 289..323
FT /note="PPR 8"
FT REPEAT 324..358
FT /note="PPR 9"
FT REPEAT 359..390
FT /note="PPR 10"
FT REPEAT 391..425
FT /note="PPR 11"
FT REPEAT 426..460
FT /note="PPR 12"
FT REPEAT 461..491
FT /note="PPR 13"
FT REPEAT 492..526
FT /note="PPR 14"
FT REPEAT 527..561
FT /note="PPR 15"
FT REPEAT 562..592
FT /note="PPR 16"
FT REPEAT 593..627
FT /note="PPR 17"
FT REPEAT 628..658
FT /note="PPR 18"
FT REPEAT 664..694
FT /note="PPR 19"
FT REGION 699..774
FT /note="Type E motif"
FT REGION 775..806
FT /note="Type E(+) motif"
FT REGION 807..893
FT /note="Type DYW motif"
SQ SEQUENCE 893 AA; 98840 MW; 27034713F17E01A8 CRC64;
MTSKVVAAAA SAFLSRTNEL GNLQKSCIRI LSFCESNSSR IGLHIHCPVI KFGLLENLDL
CNNLLSLYLK TDGIWNARKL FDEMSHRTVF AWTVMISAFT KSQEFASALS LFEEMMASGT
HPNEFTFSSV VRSCAGLRDI SYGGRVHGSV IKTGFEGNSV VGSSLSDLYS KCGQFKEACE
LFSSLQNADT ISWTMMISSL VGARKWREAL QFYSEMVKAG VPPNEFTFVK LLGASSFLGL
EFGKTIHSNI IVRGIPLNVV LKTSLVDFYS QFSKMEDAVR VLNSSGEQDV FLWTSVVSGF
VRNLRAKEAV GTFLEMRSLG LQPNNFTYSA ILSLCSAVRS LDFGKQIHSQ TIKVGFEDST
DVGNALVDMY MKCSASEVEA SRVFGAMVSP NVVSWTTLIL GLVDHGFVQD CFGLLMEMVK
REVEPNVVTL SGVLRACSKL RHVRRVLEIH AYLLRRHVDG EMVVGNSLVD AYASSRKVDY
AWNVIRSMKR RDNITYTSLV TRFNELGKHE MALSVINYMY GDGIRMDQLS LPGFISASAN
LGALETGKHL HCYSVKSGFS GAASVLNSLV DMYSKCGSLE DAKKVFEEIA TPDVVSWNGL
VSGLASNGFI SSALSAFEEM RMKETEPDSV TFLILLSACS NGRLTDLGLE YFQVMKKIYN
IEPQVEHYVH LVGILGRAGR LEEATGVVET MHLKPNAMIF KTLLRACRYR GNLSLGEDMA
NKGLALAPSD PALYILLADL YDESGKPELA QKTRNLMTEK RLSKKLGKST VEVQGKVHSF
VSEDVTRVDK TNGIYAEIES IKEEIKRFGS PYRGNENASF HSAKQAVVYG FIYASPEAPV
HVVKNKILCK DCHEFVSILT RLVDKKITVR DGNQVHIFKN GECSCKREET SFV
