PP431_ARATH
ID PP431_ARATH Reviewed; 830 AA.
AC Q9FM64;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 117.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g55740, chloroplastic;
DE AltName: Full=Protein CHLORORESPIRATORY REDUCTION 21;
DE Flags: Precursor;
GN Name=CRR21; Synonyms=PCMP-E18; OrderedLocusNames=At5g55740;
GN ORFNames=MDF20.18;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9628582; DOI=10.1093/dnares/5.1.41;
RA Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence
RT features of the regions of 1,456,315 bp covered by nineteen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:41-54(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [5]
RP FUNCTION.
RX PubMed=17483454; DOI=10.1073/pnas.0700865104;
RA Okuda K., Myouga F., Motohashi R., Shinozaki K., Shikanai T.;
RT "Conserved domain structure of pentatricopeptide repeat proteins involved
RT in chloroplast RNA editing.";
RL Proc. Natl. Acad. Sci. U.S.A. 104:8178-8183(2007).
CC -!- FUNCTION: Plays a major role in chloroplast RNA editing. Acts as a
CC site-recognition transacting factor involved in the edition of the site
CC 2 of ndhD (ndhD-2), which encodes a subunit of the NDH complex.
CC {ECO:0000269|PubMed:17483454}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB009050; BAB09241.1; -; Genomic_DNA.
DR EMBL; CP002688; AED96675.1; -; Genomic_DNA.
DR RefSeq; NP_200385.1; NM_124956.2.
DR AlphaFoldDB; Q9FM64; -.
DR SMR; Q9FM64; -.
DR STRING; 3702.AT5G55740.1; -.
DR PaxDb; Q9FM64; -.
DR PRIDE; Q9FM64; -.
DR ProteomicsDB; 249312; -.
DR EnsemblPlants; AT5G55740.1; AT5G55740.1; AT5G55740.
DR GeneID; 835668; -.
DR Gramene; AT5G55740.1; AT5G55740.1; AT5G55740.
DR KEGG; ath:AT5G55740; -.
DR Araport; AT5G55740; -.
DR TAIR; locus:2162207; AT5G55740.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; Q9FM64; -.
DR OMA; SQQCGAG; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FM64; -.
DR PRO; PR:Q9FM64; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FM64; baseline and differential.
DR Genevisible; Q9FM64; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0016556; P:mRNA modification; IMP:TAIR.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 4.
DR Pfam; PF01535; PPR; 11.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; SSF48452; 2.
DR TIGRFAMs; TIGR00756; PPR; 7.
DR PROSITE; PS51375; PPR; 17.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..59
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 60..830
FT /note="Pentatricopeptide repeat-containing protein
FT At5g55740, chloroplastic"
FT /id="PRO_0000363568"
FT REPEAT 69..103
FT /note="PPR 1"
FT REPEAT 106..136
FT /note="PPR 2"
FT REPEAT 137..171
FT /note="PPR 3"
FT REPEAT 172..206
FT /note="PPR 4"
FT REPEAT 207..237
FT /note="PPR 5"
FT REPEAT 238..272
FT /note="PPR 6"
FT REPEAT 273..307
FT /note="PPR 7"
FT REPEAT 308..338
FT /note="PPR 8"
FT REPEAT 339..373
FT /note="PPR 9"
FT REPEAT 374..408
FT /note="PPR 10"
FT REPEAT 409..439
FT /note="PPR 11"
FT REPEAT 440..474
FT /note="PPR 12"
FT REPEAT 475..509
FT /note="PPR 13"
FT REPEAT 510..544
FT /note="PPR 14"
FT REPEAT 545..575
FT /note="PPR 15"
FT REPEAT 581..611
FT /note="PPR 16"
FT REPEAT 612..646
FT /note="PPR 17"
FT REPEAT 647..682
FT /note="PPR 18"
FT REPEAT 683..713
FT /note="PPR 19"
FT REGION 15..36
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 718..793
FT /note="Type E motif"
FT REGION 796..826
FT /note="Type E(+) motif"
SQ SEQUENCE 830 AA; 92137 MW; 921CD6E6F9C056A0 CRC64;
MASLPFNTIP NKVPFSVSSK PSSKHHDEQA HSPSSTSYFH RVSSLCKNGE IKEALSLVTE
MDFRNLRIGP EIYGEILQGC VYERDLSTGK QIHARILKNG DFYARNEYIE TKLVIFYAKC
DALEIAEVLF SKLRVRNVFS WAAIIGVKCR IGLCEGALMG FVEMLENEIF PDNFVVPNVC
KACGALKWSR FGRGVHGYVV KSGLEDCVFV ASSLADMYGK CGVLDDASKV FDEIPDRNAV
AWNALMVGYV QNGKNEEAIR LFSDMRKQGV EPTRVTVSTC LSASANMGGV EEGKQSHAIA
IVNGMELDNI LGTSLLNFYC KVGLIEYAEM VFDRMFEKDV VTWNLIISGY VQQGLVEDAI
YMCQLMRLEK LKYDCVTLAT LMSAAARTEN LKLGKEVQCY CIRHSFESDI VLASTVMDMY
AKCGSIVDAK KVFDSTVEKD LILWNTLLAA YAESGLSGEA LRLFYGMQLE GVPPNVITWN
LIILSLLRNG QVDEAKDMFL QMQSSGIIPN LISWTTMMNG MVQNGCSEEA ILFLRKMQES
GLRPNAFSIT VALSACAHLA SLHIGRTIHG YIIRNLQHSS LVSIETSLVD MYAKCGDINK
AEKVFGSKLY SELPLSNAMI SAYALYGNLK EAIALYRSLE GVGLKPDNIT ITNVLSACNH
AGDINQAIEI FTDIVSKRSM KPCLEHYGLM VDLLASAGET EKALRLIEEM PFKPDARMIQ
SLVASCNKQR KTELVDYLSR KLLESEPENS GNYVTISNAY AVEGSWDEVV KMREMMKAKG
LKKKPGCSWI QITGEEGVHV FVANDKTHTR INEIQMMLAL LLYDMGTGSK
