PP433_ARATH
ID PP433_ARATH Reviewed; 530 AA.
AC Q9FMA1;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g56310;
GN Name=PCMP-E13; OrderedLocusNames=At5g56310; ORFNames=MCD7.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9628582; DOI=10.1093/dnares/5.1.41;
RA Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence
RT features of the regions of 1,456,315 bp covered by nineteen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:41-54(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB009049; BAB11258.1; -; Genomic_DNA.
DR EMBL; CP002688; AED96747.1; -; Genomic_DNA.
DR EMBL; AK229016; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_200442.1; NM_125014.5.
DR AlphaFoldDB; Q9FMA1; -.
DR SMR; Q9FMA1; -.
DR BioGRID; 20974; 1.
DR STRING; 3702.AT5G56310.1; -.
DR PaxDb; Q9FMA1; -.
DR PRIDE; Q9FMA1; -.
DR EnsemblPlants; AT5G56310.1; AT5G56310.1; AT5G56310.
DR GeneID; 835730; -.
DR Gramene; AT5G56310.1; AT5G56310.1; AT5G56310.
DR KEGG; ath:AT5G56310; -.
DR Araport; AT5G56310; -.
DR TAIR; locus:2161018; AT5G56310.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_6_1; -.
DR InParanoid; Q9FMA1; -.
DR OMA; QMYSSCA; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FMA1; -.
DR PRO; PR:Q9FMA1; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FMA1; baseline and differential.
DR Genevisible; Q9FMA1; AT.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 5.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..530
FT /note="Pentatricopeptide repeat-containing protein
FT At5g56310"
FT /id="PRO_0000363570"
FT REPEAT 77..114
FT /note="PPR 1"
FT REPEAT 115..149
FT /note="PPR 2"
FT REPEAT 150..180
FT /note="PPR 3"
FT REPEAT 181..211
FT /note="PPR 4"
FT REPEAT 214..248
FT /note="PPR 5"
FT REPEAT 249..283
FT /note="PPR 6"
FT REPEAT 284..314
FT /note="PPR 7"
FT REPEAT 315..349
FT /note="PPR 8"
FT REPEAT 350..380
FT /note="PPR 9"
FT REPEAT 386..420
FT /note="PPR 10"
FT REGION 421..496
FT /note="Type E motif"
FT REGION 497..527
FT /note="Type E(+) motif"
FT CONFLICT 1
FT /note="M -> T (in Ref. 3; AK229016)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 530 AA; 59191 MW; 5DBC1A4E3A57C8E5 CRC64;
MIQRINALSL SSGLNWFVTS LKIHGNNLKT LKQSHCYMII TGLNRDNLNV AKFIEACSNA
GHLRYAYSVF THQPCPNTYL HNTMIRALSL LDEPNAHSIA ITVYRKLWAL CAKPDTFTFP
FVLKIAVRVS DVWFGRQIHG QVVVFGFDSS VHVVTGLIQM YFSCGGLGDA RKMFDEMLVK
DVNVWNALLA GYGKVGEMDE ARSLLEMMPC WVRNEVSWTC VISGYAKSGR ASEAIEVFQR
MLMENVEPDE VTLLAVLSAC ADLGSLELGE RICSYVDHRG MNRAVSLNNA VIDMYAKSGN
ITKALDVFEC VNERNVVTWT TIIAGLATHG HGAEALAMFN RMVKAGVRPN DVTFIAILSA
CSHVGWVDLG KRLFNSMRSK YGIHPNIEHY GCMIDLLGRA GKLREADEVI KSMPFKANAA
IWGSLLAASN VHHDLELGER ALSELIKLEP NNSGNYMLLA NLYSNLGRWD ESRMMRNMMK
GIGVKKMAGE SSIEVENRVY KFISGDLTHP QVERIHEILQ EMDLQIQSKV
