PP435_ARATH
ID PP435_ARATH Reviewed; 544 AA.
AC Q9FIF7;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 111.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic;
DE AltName: Full=Protein ORGANELLE TRANSCRIPT PROCESSING 80 {ECO:0000303|PubMed:19934379};
DE Flags: Precursor;
GN Name=PCMP-E41; Synonyms=OTP80 {ECO:0000303|PubMed:19934379};
GN OrderedLocusNames=At5g59200; ORFNames=MNC17.11;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10048488; DOI=10.1093/dnares/5.6.379;
RA Asamizu E., Sato S., Kaneko T., Nakamura Y., Kotani H., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence
RT features of the regions of 1,081,958 bp covered by seventeen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:379-391(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [5]
RP FUNCTION, SUBCELLULAR LOCATION, AND DISRUPTION PHENOTYPE.
RX PubMed=19934379; DOI=10.1105/tpc.109.071472;
RA Hammani K., Okuda K., Tanz S.K., Chateigner-Boutin A.L., Shikanai T.,
RA Small I.;
RT "A study of new Arabidopsis chloroplast RNA editing mutants reveals general
RT features of editing factors and their target sites.";
RL Plant Cell 21:3686-3699(2009).
CC -!- FUNCTION: Involved in RNA editing event in chloroplasts. Required for
CC the editing of a single site in rpl23 transcript.
CC {ECO:0000269|PubMed:19934379}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC {ECO:0000269|PubMed:19934379}.
CC -!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
CC conditions. {ECO:0000269|PubMed:19934379}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB016890; BAB09765.1; -; Genomic_DNA.
DR EMBL; CP002688; AED97156.1; -; Genomic_DNA.
DR RefSeq; NP_200728.2; NM_125310.3.
DR AlphaFoldDB; Q9FIF7; -.
DR SMR; Q9FIF7; -.
DR STRING; 3702.AT5G59200.1; -.
DR PaxDb; Q9FIF7; -.
DR PRIDE; Q9FIF7; -.
DR ProteomicsDB; 249316; -.
DR EnsemblPlants; AT5G59200.1; AT5G59200.1; AT5G59200.
DR GeneID; 836038; -.
DR Gramene; AT5G59200.1; AT5G59200.1; AT5G59200.
DR KEGG; ath:AT5G59200; -.
DR Araport; AT5G59200; -.
DR TAIR; locus:2168534; AT5G59200.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_1_1; -.
DR InParanoid; Q9FIF7; -.
DR OMA; VTTYNSM; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FIF7; -.
DR PRO; PR:Q9FIF7; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FIF7; baseline and differential.
DR Genevisible; Q9FIF7; AT.
DR GO; GO:0009507; C:chloroplast; IDA:UniProtKB.
DR GO; GO:1900865; P:chloroplast RNA modification; IMP:UniProtKB.
DR GO; GO:0031425; P:chloroplast RNA processing; IMP:TAIR.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 11.
PE 3: Inferred from homology;
KW Chloroplast; mRNA processing; Plastid; Reference proteome; Repeat;
KW Transit peptide.
FT TRANSIT 1..25
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 26..544
FT /note="Putative pentatricopeptide repeat-containing protein
FT At5g59200, chloroplastic"
FT /evidence="ECO:0000255"
FT /id="PRO_0000363572"
FT REPEAT 60..90
FT /note="PPR 1"
FT REPEAT 91..125
FT /note="PPR 2"
FT REPEAT 127..156
FT /note="PPR 3"
FT REPEAT 157..187
FT /note="PPR 4"
FT REPEAT 188..218
FT /note="PPR 5"
FT REPEAT 219..253
FT /note="PPR 6"
FT REPEAT 254..288
FT /note="PPR 7"
FT REPEAT 289..319
FT /note="PPR 8"
FT REPEAT 320..354
FT /note="PPR 9"
FT REPEAT 355..385
FT /note="PPR 10"
FT REPEAT 391..421
FT /note="PPR 11"
FT REGION 1..21
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 426..501
FT /note="Type E motif"
FT REGION 502..532
FT /note="Type E(+) motif"
FT COMPBIAS 1..20
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 544 AA; 61356 MW; C89B2AF2DF277C4D CRC64;
MISSLAAITG GPSTFRRDPD SNTLRLSRRK TLISVLRSCK NIAHVPSIHA KIIRTFHDQD
AFVVFELIRV CSTLDSVDYA YDVFSYVSNP NVYLYTAMID GFVSSGRSAD GVSLYHRMIH
NSVLPDNYVI TSVLKACDLK VCREIHAQVL KLGFGSSRSV GLKMMEIYGK SGELVNAKKM
FDEMPDRDHV AATVMINCYS ECGFIKEALE LFQDVKIKDT VCWTAMIDGL VRNKEMNKAL
ELFREMQMEN VSANEFTAVC VLSACSDLGA LELGRWVHSF VENQRMELSN FVGNALINMY
SRCGDINEAR RVFRVMRDKD VISYNTMISG LAMHGASVEA INEFRDMVNR GFRPNQVTLV
ALLNACSHGG LLDIGLEVFN SMKRVFNVEP QIEHYGCIVD LLGRVGRLEE AYRFIENIPI
EPDHIMLGTL LSACKIHGNM ELGEKIAKRL FESENPDSGT YVLLSNLYAS SGKWKESTEI
RESMRDSGIE KEPGCSTIEV DNQIHEFLVG DIAHPHKEAI YQRLQELNRI LRFKENQIDI
IMGF
