PP439_ARATH
ID PP439_ARATH Reviewed; 487 AA.
AC Q9FLJ6; Q8LAI6;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 109.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g61370, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At5g61370; ORFNames=MFB13.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9628582; DOI=10.1093/dnares/5.1.41;
RA Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence
RT features of the regions of 1,456,315 bp covered by nineteen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:41-54(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB010073; BAB08492.1; -; Genomic_DNA.
DR EMBL; CP002688; AED97459.1; -; Genomic_DNA.
DR EMBL; AY065266; AAL38742.1; -; mRNA.
DR EMBL; AY142659; AAN13197.1; -; mRNA.
DR EMBL; AY087789; AAM65325.1; -; mRNA.
DR RefSeq; NP_200945.1; NM_125530.3.
DR AlphaFoldDB; Q9FLJ6; -.
DR SMR; Q9FLJ6; -.
DR PaxDb; Q9FLJ6; -.
DR PRIDE; Q9FLJ6; -.
DR EnsemblPlants; AT5G61370.1; AT5G61370.1; AT5G61370.
DR GeneID; 836258; -.
DR Gramene; AT5G61370.1; AT5G61370.1; AT5G61370.
DR KEGG; ath:AT5G61370; -.
DR Araport; AT5G61370; -.
DR TAIR; locus:2163188; AT5G61370.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_044926_0_0_1; -.
DR InParanoid; Q9FLJ6; -.
DR OMA; SVEPMVS; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FLJ6; -.
DR PRO; PR:Q9FLJ6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FLJ6; baseline and differential.
DR Genevisible; Q9FLJ6; AT.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 1.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 2.
DR PROSITE; PS51375; PPR; 8.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..90
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 91..487
FT /note="Pentatricopeptide repeat-containing protein
FT At5g61370, mitochondrial"
FT /id="PRO_0000363576"
FT REPEAT 137..171
FT /note="PPR 1"
FT REPEAT 172..202
FT /note="PPR 2"
FT REPEAT 207..241
FT /note="PPR 3"
FT REPEAT 242..283
FT /note="PPR 4"
FT REPEAT 284..318
FT /note="PPR 5"
FT REPEAT 319..353
FT /note="PPR 6"
FT REPEAT 354..388
FT /note="PPR 7"
FT REPEAT 389..423
FT /note="PPR 8"
FT REGION 466..487
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 151
FT /note="V -> I (in Ref. 4; AAM65325)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 487 AA; 55549 MW; 6AE7747F9482D493 CRC64;
MMSTTVRLNR FTYLTSTAKL TRYFCSHHLV DRSETALHEV IRIVSSPVGG LDDLEENLNQ
VSVSPSSNLV TQVIESCKNE TSPRRLLRFF SWSCKSLGSS LHDKEFNYVL RVLAEKKDHT
AMQILLSDLR KENRAMDKQT FSIVAETLVK VGKEEDAIGI FKILDKFSCP QDGFTVTAII
SALCSRGHVK RALGVMHHHK DVISGNELSV YRSLLFGWSV QRNVKEARRV IQDMKSAGIT
PDLFCFNSLL TCLCERNVNR NPSGLVPEAL NIMLEMRSYK IQPTSMSYNI LLSCLGRTRR
VRESCQILEQ MKRSGCDPDT GSYYFVVRVL YLTGRFGKGN QIVDEMIERG FRPERKFYYD
LIGVLCGVER VNFALQLFEK MKRSSVGGYG QVYDLLIPKL CKGGNFEKGR ELWEEALSID
VTLSCSISLL DPSVTEVFKP MKMKEEAAMV DRRALNLKIH ARMNKTKPKL KLKPKRRSKT
KKKNLQH
