PP442_ARATH
ID PP442_ARATH Reviewed; 974 AA.
AC Q9FIT7; Q7Y1Z6; Q94BP1;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g61990, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At5g61990; ORFNames=MTG10.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9872454; DOI=10.1093/dnares/5.5.297;
RA Nakamura Y., Sato S., Asamizu E., Kaneko T., Kotani H., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VII. Sequence
RT features of the regions of 1,013,767 bp covered by sixteen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:297-308(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB016880; BAB10161.1; -; Genomic_DNA.
DR EMBL; CP002688; AED97546.1; -; Genomic_DNA.
DR EMBL; AY039979; AAK64156.1; -; mRNA.
DR EMBL; BT008689; AAP40495.1; -; mRNA.
DR RefSeq; NP_568948.1; NM_125592.2.
DR AlphaFoldDB; Q9FIT7; -.
DR SMR; Q9FIT7; -.
DR STRING; 3702.AT5G61990.1; -.
DR PaxDb; Q9FIT7; -.
DR PRIDE; Q9FIT7; -.
DR ProteomicsDB; 249323; -.
DR EnsemblPlants; AT5G61990.1; AT5G61990.1; AT5G61990.
DR GeneID; 836320; -.
DR Gramene; AT5G61990.1; AT5G61990.1; AT5G61990.
DR KEGG; ath:AT5G61990; -.
DR Araport; AT5G61990; -.
DR TAIR; locus:2174008; AT5G61990.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_9_1; -.
DR InParanoid; Q9FIT7; -.
DR OMA; ILNTANW; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FIT7; -.
DR PRO; PR:Q9FIT7; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FIT7; baseline and differential.
DR Genevisible; Q9FIT7; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 11.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 6.
DR Pfam; PF13812; PPR_3; 2.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 18.
DR PROSITE; PS51375; PPR; 23.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..31
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 32..974
FT /note="Pentatricopeptide repeat-containing protein
FT At5g61990, mitochondrial"
FT /id="PRO_0000363579"
FT REPEAT 96..130
FT /note="PPR 1"
FT REPEAT 150..184
FT /note="PPR 2"
FT REPEAT 185..219
FT /note="PPR 3"
FT REPEAT 220..250
FT /note="PPR 4"
FT REPEAT 257..275
FT /note="PPR 5"
FT REPEAT 276..310
FT /note="PPR 6"
FT REPEAT 311..345
FT /note="PPR 7"
FT REPEAT 346..380
FT /note="PPR 8"
FT REPEAT 381..415
FT /note="PPR 9"
FT REPEAT 416..450
FT /note="PPR 10"
FT REPEAT 451..485
FT /note="PPR 11"
FT REPEAT 486..520
FT /note="PPR 12"
FT REPEAT 521..555
FT /note="PPR 13"
FT REPEAT 556..590
FT /note="PPR 14"
FT REPEAT 591..625
FT /note="PPR 15"
FT REPEAT 626..660
FT /note="PPR 16"
FT REPEAT 661..695
FT /note="PPR 17"
FT REPEAT 696..730
FT /note="PPR 18"
FT REPEAT 731..761
FT /note="PPR 19"
FT REPEAT 765..799
FT /note="PPR 20"
FT REPEAT 804..838
FT /note="PPR 21"
FT REPEAT 839..873
FT /note="PPR 22"
FT REPEAT 874..908
FT /note="PPR 23"
FT REPEAT 914..948
FT /note="PPR 24"
FT CONFLICT 165
FT /note="G -> E (in Ref. 3; AAK64156)"
FT /evidence="ECO:0000305"
FT CONFLICT 571
FT /note="G -> E (in Ref. 3; AAP40495)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 974 AA; 108809 MW; DE03DE09E7F8A63D CRC64;
MMGSMLFRKR TLVTRANFLL FRSFSVNVEK LSDASAEIAG ILKQENWRDT LVSSNLSIEI
NPEVVLSVLR SKRVDDPSKL LSFFNWVDSQ KVTEQKLDSF SFLALDLCNF GSFEKALSVV
ERMIERNWPV AEVWSSIVRC SQEFVGKSDD GVLFGILFDG YIAKGYIEEA VFVFSSSMGL
ELVPRLSRCK VLLDALLRWN RLDLFWDVYK GMVERNVVFD VKTYHMLIIA HCRAGNVQLG
KDVLFKTEKE FRTATLNVDG ALKLKESMIC KGLVPLKYTY DVLIDGLCKI KRLEDAKSLL
VEMDSLGVSL DNHTYSLLID GLLKGRNADA AKGLVHEMVS HGINIKPYMY DCCICVMSKE
GVMEKAKALF DGMIASGLIP QAQAYASLIE GYCREKNVRQ GYELLVEMKK RNIVISPYTY
GTVVKGMCSS GDLDGAYNIV KEMIASGCRP NVVIYTTLIK TFLQNSRFGD AMRVLKEMKE
QGIAPDIFCY NSLIIGLSKA KRMDEARSFL VEMVENGLKP NAFTYGAFIS GYIEASEFAS
ADKYVKEMRE CGVLPNKVLC TGLINEYCKK GKVIEACSAY RSMVDQGILG DAKTYTVLMN
GLFKNDKVDD AEEIFREMRG KGIAPDVFSY GVLINGFSKL GNMQKASSIF DEMVEEGLTP
NVIIYNMLLG GFCRSGEIEK AKELLDEMSV KGLHPNAVTY CTIIDGYCKS GDLAEAFRLF
DEMKLKGLVP DSFVYTTLVD GCCRLNDVER AITIFGTNKK GCASSTAPFN ALINWVFKFG
KTELKTEVLN RLMDGSFDRF GKPNDVTYNI MIDYLCKEGN LEAAKELFHQ MQNANLMPTV
ITYTSLLNGY DKMGRRAEMF PVFDEAIAAG IEPDHIMYSV IINAFLKEGM TTKALVLVDQ
MFAKNAVDDG CKLSISTCRA LLSGFAKVGE MEVAEKVMEN MVRLQYIPDS ATVIELINES
CISSNQRVEA DAVP
