PP447_ARATH
ID PP447_ARATH Reviewed; 637 AA.
AC Q9FH87; O49535;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 107.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At5g65820;
GN OrderedLocusNames=At5g65820; ORFNames=K22J17.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAA16678.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB020743; BAB09050.1; -; Genomic_DNA.
DR EMBL; AL021684; CAA16678.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED98111.1; -; Genomic_DNA.
DR PIR; T05888; T05888.
DR RefSeq; NP_201383.1; NM_125979.1.
DR AlphaFoldDB; Q9FH87; -.
DR SMR; Q9FH87; -.
DR STRING; 3702.AT5G65820.1; -.
DR PaxDb; Q9FH87; -.
DR PRIDE; Q9FH87; -.
DR ProteomicsDB; 249328; -.
DR EnsemblPlants; AT5G65820.1; AT5G65820.1; AT5G65820.
DR GeneID; 836711; -.
DR Gramene; AT5G65820.1; AT5G65820.1; AT5G65820.
DR KEGG; ath:AT5G65820; -.
DR Araport; AT5G65820; -.
DR TAIR; locus:2156213; AT5G65820.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_20_1; -.
DR InParanoid; Q9FH87; -.
DR OMA; DEMPKFG; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FH87; -.
DR PRO; PR:Q9FH87; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FH87; baseline and differential.
DR Genevisible; Q9FH87; AT.
DR Gene3D; 1.25.40.10; -; 5.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; SSF48452; 1.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 11.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..637
FT /note="Putative pentatricopeptide repeat-containing protein
FT At5g65820"
FT /id="PRO_0000363584"
FT REPEAT 146..180
FT /note="PPR 1"
FT REPEAT 182..216
FT /note="PPR 2"
FT REPEAT 217..247
FT /note="PPR 3"
FT REPEAT 251..285
FT /note="PPR 4"
FT REPEAT 286..320
FT /note="PPR 5"
FT REPEAT 321..355
FT /note="PPR 6"
FT REPEAT 356..390
FT /note="PPR 7"
FT REPEAT 391..425
FT /note="PPR 8"
FT REPEAT 426..460
FT /note="PPR 9"
FT REPEAT 461..495
FT /note="PPR 10"
FT REPEAT 498..532
FT /note="PPR 11"
FT REPEAT 534..568
FT /note="PPR 12"
FT REGION 616..637
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 637 AA; 74120 MW; 05C74D310D97F470 CRC64;
MLPFTREMHR FSPIVEFLLS KRQIFLHYSQ FKSRFDLIHR SFHVSRALED NFRRSNGIGL
VCLEKSHNDR TKNSKYDEFA SDVEKSYRIL RKFHSRVPKL ELALNESGVE LRPGLIERVL
NRCGDAGNLG YRFFVWAAKQ PRYCHSIEVY KSMVKILSKM RQFGAVWGLI EEMRKENPQL
IEPELFVVLV QRFASADMVK KAIEVLDEMP KFGFEPDEYV FGCLLDALCK HGSVKDAAKL
FEDMRMRFPV NLRYFTSLLY GWCRVGKMME AKYVLVQMNE AGFEPDIVDY TNLLSGYANA
GKMADAYDLL RDMRRRGFEP NANCYTVLIQ ALCKVDRMEE AMKVFVEMER YECEADVVTY
TALVSGFCKW GKIDKCYIVL DDMIKKGLMP SELTYMHIMV AHEKKESFEE CLELMEKMRQ
IEYHPDIGIY NVVIRLACKL GEVKEAVRLW NEMEENGLSP GVDTFVIMIN GLASQGCLLE
ASDHFKEMVT RGLFSVSQYG TLKLLLNTVL KDKKLEMAKD VWSCITSKGA CELNVLSWTI
WIHALFSKGY EKEACSYCIE MIEMDFMPQP DTFAKLMKGL KKLYNREFAG EITEKVRNMA
AEREMSFKMY KRRGVQDLTE KAKSKQDREG KKKQRSR
