PP451_ARATH
ID PP451_ARATH Reviewed; 798 AA.
AC Q9FJW6; Q56WD0;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 2.
DT 25-MAY-2022, entry version 120.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g67570, chloroplastic;
DE AltName: Full=Protein DELAYED GREENING 1;
DE AltName: Full=Protein EMBRYO DEFECTIVE 1408;
DE Flags: Precursor;
GN Name=DG1; Synonyms=EMB1408; OrderedLocusNames=At5g67570; ORFNames=K9I9.14;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], SUBCELLULAR LOCATION, DEVELOPMENTAL STAGE, AND
RP FUNCTION.
RX PubMed=18400937; DOI=10.1104/pp.108.116194;
RA Chi W., Ma J., Zhang D., Guo J., Chen F., Lu C., Zhang L.;
RT "The pentratricopeptide repeat protein DELAYED GREENING1 is involved in the
RT regulation of early chloroplast development and chloroplast gene expression
RT in Arabidopsis.";
RL Plant Physiol. 147:573-584(2008).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9734815; DOI=10.1093/dnares/5.3.203;
RA Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence
RT features of the regions of 1,367,185 bp covered by 19 physically assigned
RT P1 and TAC clones.";
RL DNA Res. 5:203-216(1998).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 363-798.
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
RN [6]
RP FUNCTION, AND INTERACTION WITH SIGF.
RX PubMed=20626654; DOI=10.1111/j.1365-313x.2010.04304.x;
RA Chi W., Mao J., Li Q., Ji D., Zou M., Lu C., Zhang L.;
RT "Interaction of the pentatricopeptide-repeat protein DELAYED GREENING 1
RT with sigma factor SIG6 in the regulation of chloroplast gene expression in
RT Arabidopsis cotyledons.";
RL Plant J. 64:14-25(2010).
CC -!- FUNCTION: Involved in the regulation of early chloroplast development
CC and chloroplast gene expression in a SIGF-dependent manner.
CC {ECO:0000269|PubMed:18400937, ECO:0000269|PubMed:20626654}.
CC -!- SUBUNIT: Interacts (via C-terminus) with SIGF (via N-terminus).
CC {ECO:0000269|PubMed:20626654}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC {ECO:0000269|PubMed:18400937}.
CC -!- DEVELOPMENTAL STAGE: Expressed in the early stage of development and
CC decreased as the age and developmental state of both the plant and
CC leaves increased. {ECO:0000269|PubMed:18400937}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB08465.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAD95068.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AB013390; BAB08465.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED98361.1; -; Genomic_DNA.
DR EMBL; AK222112; BAD95068.1; ALT_INIT; mRNA.
DR RefSeq; NP_201558.3; NM_126157.4.
DR AlphaFoldDB; Q9FJW6; -.
DR SMR; Q9FJW6; -.
DR BioGRID; 22135; 1.
DR STRING; 3702.AT5G67570.1; -.
DR PaxDb; Q9FJW6; -.
DR PRIDE; Q9FJW6; -.
DR ProteomicsDB; 249332; -.
DR EnsemblPlants; AT5G67570.1; AT5G67570.1; AT5G67570.
DR GeneID; 836893; -.
DR Gramene; AT5G67570.1; AT5G67570.1; AT5G67570.
DR KEGG; ath:AT5G67570; -.
DR Araport; AT5G67570; -.
DR TAIR; locus:2158601; AT5G67570.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_009409_1_0_1; -.
DR InParanoid; Q9FJW6; -.
DR OMA; FWEEGRV; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9FJW6; -.
DR PRO; PR:Q9FJW6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FJW6; baseline and differential.
DR Genevisible; Q9FJW6; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:0009658; P:chloroplast organization; IMP:TAIR.
DR GO; GO:0042793; P:plastid transcription; IMP:UniProtKB.
DR Gene3D; 1.25.40.10; -; 3.
DR InterPro; IPR044645; DG1/EMB2279-like.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR46935; PTHR46935; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 1.
DR Pfam; PF13812; PPR_3; 1.
DR TIGRFAMs; TIGR00756; PPR; 2.
DR PROSITE; PS51375; PPR; 10.
PE 1: Evidence at protein level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..?
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN ?..798
FT /note="Pentatricopeptide repeat-containing protein
FT At5g67570, chloroplastic"
FT /id="PRO_0000363588"
FT REPEAT 254..284
FT /note="PPR 1"
FT REPEAT 290..324
FT /note="PPR 2"
FT REPEAT 340..374
FT /note="PPR 3"
FT REPEAT 375..409
FT /note="PPR 4"
FT REPEAT 410..444
FT /note="PPR 5"
FT REPEAT 445..480
FT /note="PPR 6"
FT REPEAT 481..511
FT /note="PPR 7"
FT REPEAT 515..545
FT /note="PPR 8"
FT REPEAT 553..587
FT /note="PPR 9"
FT REPEAT 588..622
FT /note="PPR 10"
FT REGION 1..21
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 50..73
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 55..73
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 798 AA; 92059 MW; A1D1C92BC109A295 CRC64;
MDASVVRFSQ SPARVPPEFE PDMEKIKRRL LKYGVDPTPK ILNNLRKKEI QKHNRRTKRE
TESEAEVYTE AQKQSMEEEA RFQTLRREYK QFTRSISGKR GGDVGLMVGN PWEGIERVKL
KELVSGVRRE EVSAGELKKE NLKELKKILE KDLRWVLDDD VDVEEFDLDK EFDPAKRWRN
EGEAVRVLVD RLSGREINEK HWKFVRMMNQ SGLQFTEDQM LKIVDRLGRK QSWKQASAVV
HWVYSDKKRK HLRSRFVYTK LLSVLGFARR PQEALQIFNQ MLGDRQLYPD MAAYHCIAVT
LGQAGLLKEL LKVIERMRQK PTKLTKNLRQ KNWDPVLEPD LVVYNAILNA CVPTLQWKAV
SWVFVELRKN GLRPNGATYG LAMEVMLESG KFDRVHDFFR KMKSSGEAPK AITYKVLVRA
LWREGKIEEA VEAVRDMEQK GVIGTGSVYY ELACCLCNNG RWCDAMLEVG RMKRLENCRP
LEITFTGLIA ASLNGGHVDD CMAIFQYMKD KCDPNIGTAN MMLKVYGRND MFSEAKELFE
EIVSRKETHL VPNEYTYSFM LEASARSLQW EYFEHVYQTM VLSGYQMDQT KHASMLIEAS
RAGKWSLLEH AFDAVLEDGE IPHPLFFTEL LCHATAKGDF QRAITLINTV ALASFQISEE
EWTDLFEEHQ DWLTQDNLHK LSDHLIECDY VSEPTVSNLS KSLKSRCGSS SSSAQPLLAV
DVTTQSQGEK PEEDLLLQDT TMEDDNSANG EAWEFTETEL ETLGLEELEI DDDEESSDSD
SLSVYDILKE WEESSKKE
