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PPAE_BOMMO
ID   PPAE_BOMMO              Reviewed;         441 AA.
AC   Q9XXV0; H9JW33;
DT   28-FEB-2018, integrated into UniProtKB/Swiss-Prot.
DT   28-FEB-2018, sequence version 2.
DT   03-AUG-2022, entry version 116.
DE   RecName: Full=Phenoloxidase-activating enzyme {ECO:0000305};
DE            EC=3.4.21.- {ECO:0000269|PubMed:10066809, ECO:0000269|PubMed:4197814, ECO:0000269|PubMed:4197815, ECO:0000269|PubMed:7981662};
DE   AltName: Full=Prophenoloxidase-activating enzyme {ECO:0000303|PubMed:4197814};
DE   Contains:
DE     RecName: Full=Phenoloxidase-activating enzyme light chain {ECO:0000303|PubMed:10066809};
DE   Contains:
DE     RecName: Full=Phenoloxidase-activating enzyme heavy chain {ECO:0000303|PubMed:10066809};
DE   Flags: Precursor;
GN   Name=PPAE {ECO:0000303|PubMed:4197814};
OS   Bombyx mori (Silk moth).
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea;
OC   Bombycidae; Bombycinae; Bombyx.
OX   NCBI_TaxID=7091 {ECO:0000312|EMBL:BAA76308.1};
RN   [1] {ECO:0000312|EMBL:BAA76308.1}
RP   NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 22-32 AND 174-189,
RP   FUNCTION, CATALYTIC ACTIVITY, BIOPHYSICOCHEMICAL PROPERTIES, SUBUNIT,
RP   DEVELOPMENTAL STAGE, GLYCOSYLATION, PROTEOLYTIC CLEAVAGE, MASS
RP   SPECTROMETRY, DISULFIDE BONDS, AND PYROGLUTAMATE FORMATION AT GLN-22.
RC   TISSUE=Integument {ECO:0000312|EMBL:BAA76308.1};
RX   PubMed=10066809; DOI=10.1074/jbc.274.11.7441;
RA   Satoh D., Horii A., Ochiai M., Ashida M.;
RT   "Prophenoloxidase-activating enzyme of the silkworm, Bombyx mori.
RT   Purification, characterization, and cDNA cloning.";
RL   J. Biol. Chem. 274:7441-7453(1999).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=p50T;
RX   PubMed=19121390; DOI=10.1016/j.ibmb.2008.11.004;
RG   International Silkworm Genome Consortium;
RT   "The genome of a lepidopteran model insect, the silkworm Bombyx mori.";
RL   Insect Biochem. Mol. Biol. 38:1036-1045(2008).
RN   [3] {ECO:0000305}
RP   FUNCTION, CATALYTIC ACTIVITY, ACTIVITY REGULATION, BIOPHYSICOCHEMICAL
RP   PROPERTIES, AND DEVELOPMENTAL STAGE.
RX   PubMed=4197814; DOI=10.1016/0003-9861(73)90406-2;
RA   Dohke K.;
RT   "Studies on prephenoloxidase-activating enzyme from cuticle of the silkworm
RT   Bombyx mori. I. Activation reaction by the enzyme.";
RL   Arch. Biochem. Biophys. 157:203-209(1973).
RN   [4] {ECO:0000305}
RP   FUNCTION, CATALYTIC ACTIVITY, ACTIVITY REGULATION, BIOPHYSICOCHEMICAL
RP   PROPERTIES, AND DEVELOPMENTAL STAGE.
RX   PubMed=4197815; DOI=10.1016/0003-9861(73)90407-4;
RA   Dohke K.;
RT   "Studies on prephenoloxidase-activating enzyme from cuticle of the silkworm
RT   Bombyx mori. II. Purification and characterization of the enzyme.";
RL   Arch. Biochem. Biophys. 157:210-221(1973).
RN   [5] {ECO:0000305}
RP   FUNCTION, CATALYTIC ACTIVITY, ACTIVITY REGULATION, AND DEVELOPMENTAL STAGE.
RX   PubMed=7981662;
RA   Aso Y., Yamashita T., Meno K., Murakami M.;
RT   "Inhibition of prophenoloxidase-activating enzyme from Bombyx mori by
RT   endogenous chymotrypsin inhibitors.";
RL   Biochem. Mol. Biol. Int. 33:751-758(1994).
CC   -!- FUNCTION: Endopeptidase with selective post-Arg cleavage site
CC       (PubMed:4197814, PubMed:4197815, PubMed:10066809, PubMed:7981662).
CC       Activates prophenoloxidase (PubMed:4197814, PubMed:4197815). Has a
CC       probable role in the melanization process as part of the innate immune
CC       response (Probable). {ECO:0000269|PubMed:10066809,
CC       ECO:0000269|PubMed:4197814, ECO:0000269|PubMed:4197815,
CC       ECO:0000269|PubMed:7981662, ECO:0000305}.
CC   -!- ACTIVITY REGULATION: Stabilized by calcium (PubMed:4197814). Inhibited
CC       by di-isopropyl phosphorofluoridate (DFP),
CC       phenylmethanesulfonylfluoride (PMSF), p-nitrophenyl-p'-
CC       guanidinobenzonate (p-NPGB), p-chloromercuribenzoate (PCMB),
CC       ethylenediaminetetraacetic acid (EDTA), urea and CI-13c
CC       (PubMed:4197814, PubMed:4197815, PubMed:7981662).
CC       {ECO:0000269|PubMed:4197814, ECO:0000269|PubMed:4197815,
CC       ECO:0000269|PubMed:7981662}.
CC   -!- BIOPHYSICOCHEMICAL PROPERTIES:
CC       Kinetic parameters:
CC         KM=2.2 uM for prophenoloxidase (at pH 7.6 and 0 degrees Celsius)
CC         {ECO:0000269|PubMed:4197814, ECO:0000269|PubMed:4197815};
CC         KM=1.43 mM for N-benzoyl-L-arginine ethyl ester hydrochloride (BAEE)
CC         (in the absence of KCl) {ECO:0000269|PubMed:4197815};
CC         KM=0.77 mM for N-benzoyl-L-arginine ethyl ester hydrochloride (BAEE)
CC         (in the presence of 0.025 M KCl) {ECO:0000269|PubMed:4197815};
CC         KM=1.2 mM for N-benzoyl-L-arginine ethyl ester hydrochloride (BAEE)
CC         (in the presence of 0.004 M KCl) {ECO:0000269|PubMed:10066809};
CC         KM=0.35 mM for N-benzoyl-L-arginine ethyl ester hydrochloride (BAEE)
CC         (in the presence of 0.5 M KCl) {ECO:0000269|PubMed:10066809};
CC         KM=0.145 mM for N-benzoyl-L-arginine ethyl ester hydrochloride (BAEE)
CC         (in the presence of 0.5 M KCl) {ECO:0000269|PubMed:4197815};
CC         KM=0.709 mM for N-p-tosyl-L-arginine methyl ester hydrochloride
CC         (TAME) (in the presence of 0.5 M KCl) {ECO:0000269|PubMed:4197815};
CC       pH dependence:
CC         Optimum pH is 6.0-8.5. {ECO:0000269|PubMed:10066809};
CC       Temperature dependence:
CC         Optimum temperature is 0-25 degrees Celsius.
CC         {ECO:0000269|PubMed:10066809};
CC   -!- SUBUNIT: In the active form, heterodimer of a light chain and a heavy
CC       chain; disulfide-linked. {ECO:0000305|PubMed:10066809}.
CC   -!- DEVELOPMENTAL STAGE: Expressed in eggs and larval cuticles (at protein
CC       level) (PubMed:10066809, PubMed:4197814, PubMed:4197815,
CC       PubMed:7981662). Expressed in larval hemocytes and salivary glands
CC       (PubMed:10066809). {ECO:0000269|PubMed:10066809,
CC       ECO:0000269|PubMed:4197814, ECO:0000269|PubMed:4197815,
CC       ECO:0000269|PubMed:7981662}.
CC   -!- DOMAIN: The clip domain consists of 35-55 residues which are 'knitted'
CC       together usually by 3 conserved disulfide bonds forming a clip-like
CC       compact structure. {ECO:0000255|PROSITE-ProRule:PRU01236}.
CC   -!- PTM: Proteolytically cleaved for activation (PubMed:10066809). Cleavage
CC       produces a light chain and a catalytic heavy chain which remains
CC       covalently associated probably through an interchain disulfide bond
CC       (Probable). {ECO:0000269|PubMed:10066809, ECO:0000305|PubMed:10066809}.
CC   -!- PTM: Glycosylated. {ECO:0000269|PubMed:10066809}.
CC   -!- MASS SPECTROMETRY: [Phenoloxidase-activating enzyme heavy chain]:
CC       Mass=32848; Method=MALDI; Evidence={ECO:0000269|PubMed:10066809};
CC   -!- SIMILARITY: Belongs to the peptidase S1 family. CLIP subfamily.
CC       {ECO:0000255|PROSITE-ProRule:PRU01236}.
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DR   EMBL; AB009670; BAA76308.1; -; mRNA.
DR   EMBL; BABH01025554; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   RefSeq; NP_001036832.1; NM_001043367.1.
DR   AlphaFoldDB; Q9XXV0; -.
DR   SMR; Q9XXV0; -.
DR   STRING; 7091.BGIBMGA013746-TA; -.
DR   MEROPS; S01.305; -.
DR   GeneID; 692368; -.
DR   KEGG; bmor:692368; -.
DR   CTD; 692368; -.
DR   eggNOG; KOG3627; Eukaryota.
DR   HOGENOM; CLU_006842_0_3_1; -.
DR   OrthoDB; 1314811at2759; -.
DR   Proteomes; UP000005204; Unassembled WGS sequence.
DR   GO; GO:0004175; F:endopeptidase activity; IDA:UniProtKB.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0008233; F:peptidase activity; IDA:UniProtKB.
DR   GO; GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro.
DR   GO; GO:0016485; P:protein processing; IDA:UniProtKB.
DR   CDD; cd00190; Tryp_SPc; 1.
DR   Gene3D; 2.40.10.10; -; 2.
DR   Gene3D; 3.30.1640.30; -; 2.
DR   InterPro; IPR022700; CLIP.
DR   InterPro; IPR038565; CLIP_sf.
DR   InterPro; IPR009003; Peptidase_S1_PA.
DR   InterPro; IPR043504; Peptidase_S1_PA_chymotrypsin.
DR   InterPro; IPR001314; Peptidase_S1A.
DR   InterPro; IPR001254; Trypsin_dom.
DR   InterPro; IPR018114; TRYPSIN_HIS.
DR   InterPro; IPR033116; TRYPSIN_SER.
DR   Pfam; PF12032; CLIP; 2.
DR   Pfam; PF00089; Trypsin; 1.
DR   PRINTS; PR00722; CHYMOTRYPSIN.
DR   SMART; SM00680; CLIP; 2.
DR   SMART; SM00020; Tryp_SPc; 1.
DR   SUPFAM; SSF50494; SSF50494; 1.
DR   PROSITE; PS51888; CLIP; 2.
DR   PROSITE; PS50240; TRYPSIN_DOM; 1.
DR   PROSITE; PS00134; TRYPSIN_HIS; 1.
DR   PROSITE; PS00135; TRYPSIN_SER; 1.
PE   1: Evidence at protein level;
KW   Calcium; Direct protein sequencing; Disulfide bond; Glycoprotein;
KW   Hydrolase; Metal-binding; Protease; Pyrrolidone carboxylic acid;
KW   Reference proteome; Serine protease; Signal; Zymogen.
FT   SIGNAL          1..21
FT                   /evidence="ECO:0000269|PubMed:10066809"
FT   CHAIN           22..173
FT                   /note="Phenoloxidase-activating enzyme light chain"
FT                   /evidence="ECO:0000305|PubMed:10066809"
FT                   /id="PRO_5004338749"
FT   CHAIN           174..441
FT                   /note="Phenoloxidase-activating enzyme heavy chain"
FT                   /evidence="ECO:0000305|PubMed:10066809"
FT                   /id="PRO_0000443318"
FT   DOMAIN          23..76
FT                   /note="Clip 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01236,
FT                   ECO:0000303|PubMed:10066809"
FT   DOMAIN          77..127
FT                   /note="Clip 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01236,
FT                   ECO:0000303|PubMed:10066809"
FT   DOMAIN          174..440
FT                   /note="Peptidase S1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00274"
FT   ACT_SITE        218
FT                   /note="Charge relay system"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00274"
FT   ACT_SITE        285
FT                   /note="Charge relay system"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00274"
FT   ACT_SITE        391
FT                   /note="Charge relay system"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00274"
FT   BINDING         237
FT                   /ligand="Ca(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29108"
FT                   /evidence="ECO:0000250|UniProtKB:O97366"
FT   BINDING         239
FT                   /ligand="Ca(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29108"
FT                   /evidence="ECO:0000250|UniProtKB:O97366"
FT   BINDING         242
FT                   /ligand="Ca(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29108"
FT                   /evidence="ECO:0000250|UniProtKB:O97366"
FT   BINDING         246
FT                   /ligand="Ca(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29108"
FT                   /evidence="ECO:0000250|UniProtKB:O97366"
FT   SITE            173..174
FT                   /note="Cleavage"
FT                   /evidence="ECO:0000269|PubMed:10066809"
FT   MOD_RES         22
FT                   /note="Pyrrolidone carboxylic acid"
FT                   /evidence="ECO:0000269|PubMed:10066809"
FT   CARBOHYD        239
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT   CARBOHYD        334
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT   DISULFID        24..75
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01236,
FT                   ECO:0000303|PubMed:10066809"
FT   DISULFID        34..65
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01236,
FT                   ECO:0000303|PubMed:10066809"
FT   DISULFID        40..76
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01236,
FT                   ECO:0000303|PubMed:10066809"
FT   DISULFID        78..126
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01236,
FT                   ECO:0000303|PubMed:10066809"
FT   DISULFID        88..117
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01236,
FT                   ECO:0000303|PubMed:10066809"
FT   DISULFID        94..127
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01236,
FT                   ECO:0000303|PubMed:10066809"
FT   DISULFID        164..305
FT                   /note="Interchain (between light and heavy chains)"
FT                   /evidence="ECO:0000250|UniProtKB:Q9VB68"
FT   DISULFID        203..219
FT                   /evidence="ECO:0000250|UniProtKB:Q9VB68"
FT   DISULFID        356..377
FT                   /evidence="ECO:0000250|UniProtKB:Q9VB68"
FT   DISULFID        387..416
FT                   /evidence="ECO:0000250|UniProtKB:Q9VB68"
FT   CONFLICT        223
FT                   /note="A -> G (in Ref. 1; BAA76308)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   441 AA;  47985 MW;  D503F4BBE64FFBA2 CRC64;
     MFLIWTFIVA VLAIQTKSVV AQSCRTPNGL NGNCVSVYEC QALLAILNNQ RRTQQDEKFL
     RDSQCGTKNS VPAVCCPCNA ADGQQGNCVN INSCPYVLQL LKNPNEANLN YVRGSVCQGS
     EQQSICCVTA PQSTAVTTTP RPKRVHACQS EMTATPPNPE GKCCGRDIAV GDKIVGGAPA
     SIDSYPWLVV IEYVRLERTM LLCGGALISG KYVLTAGHCV KGAILDVGTP KTVRLGEYNT
     TNPGRDCVSV SAGGTDCTDP LVKIGIEKTI PHPDYQPYHF LRKHDIGLIR LQSIAPFTDF
     IRPICLPSTD YTVNPPSKFA LTVAGWGRYL QFDNGTVRSS KIKLHVTLPF VQRDVCEANQ
     KPLRNGQRIT LWKGQMCAGG EAGKDSCKGD SGGPLMYEHS KKYEAVGIVS FGPEKCGQID
     IPGVYTNVYE YLPWIQNTIE P
 
 
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