PPD1_ARATH
ID PPD1_ARATH Reviewed; 287 AA.
AC O23403; Q3EA17; Q681Q6; Q8LF71;
DT 04-MAY-2001, integrated into UniProtKB/Swiss-Prot.
DT 01-JAN-1998, sequence version 1.
DT 03-AUG-2022, entry version 144.
DE RecName: Full=PsbP domain-containing protein 1, chloroplastic;
DE AltName: Full=OEC23-like protein 3;
DE AltName: Full=PsbP-related thylakoid lumenal protein 1;
DE Flags: Precursor;
GN Name=PPD1; OrderedLocusNames=At4g15510; ORFNames=dl3795w, FCAALL.88;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9461215; DOI=10.1038/35140;
RA Bevan M., Bancroft I., Bent E., Love K., Goodman H.M., Dean C.,
RA Bergkamp R., Dirkse W., van Staveren M., Stiekema W., Drost L., Ridley P.,
RA Hudson S.-A., Patel K., Murphy G., Piffanelli P., Wedler H., Wedler E.,
RA Wambutt R., Weitzenegger T., Pohl T., Terryn N., Gielen J., Villarroel R.,
RA De Clercq R., van Montagu M., Lecharny A., Aubourg S., Gy I., Kreis M.,
RA Lao N., Kavanagh T., Hempel S., Kotter P., Entian K.-D., Rieger M.,
RA Schaefer M., Funk B., Mueller-Auer S., Silvey M., James R., Monfort A.,
RA Pons A., Puigdomenech P., Douka A., Voukelatou E., Milioni D.,
RA Hatzopoulos P., Piravandi E., Obermaier B., Hilbert H., Duesterhoeft A.,
RA Moores T., Jones J.D.G., Eneva T., Palme K., Benes V., Rechmann S.,
RA Ansorge W., Cooke R., Berger C., Delseny M., Voet M., Volckaert G.,
RA Mewes H.-W., Klosterman S., Schueller C., Chalwatzis N.;
RT "Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis
RT thaliana.";
RL Nature 391:485-488(1998).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 7-287.
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP PROTEIN SEQUENCE OF 105-124, AND SUBCELLULAR LOCATION.
RX PubMed=11719511; DOI=10.1074/jbc.m108575200;
RA Schubert M., Petersson U.A., Haas B.J., Funk C., Schroeder W.P.,
RA Kieselbach T.;
RT "Proteome map of the chloroplast lumen of Arabidopsis thaliana.";
RL J. Biol. Chem. 277:8354-8365(2002).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17827269; DOI=10.1104/pp.107.105866;
RA Ishihara S., Takabayashi A., Ido K., Endo T., Ifuku K., Sato F.;
RT "Distinct functions for the two PsbP-like proteins PPL1 and PPL2 in the
RT chloroplast thylakoid lumen of Arabidopsis.";
RL Plant Physiol. 145:668-679(2007).
RN [8]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND SUBCELLULAR LOCATION [LARGE SCALE
RP ANALYSIS].
RX PubMed=18431481; DOI=10.1371/journal.pone.0001994;
RA Zybailov B., Rutschow H., Friso G., Rudella A., Emanuelsson O., Sun Q.,
RA van Wijk K.J.;
RT "Sorting signals, N-terminal modifications and abundance of the chloroplast
RT proteome.";
RL PLoS ONE 3:E1994-E1994(2008).
RN [9]
RP FUNCTION, DISRUPTION PHENOTYPE, DEVELOPMENTAL STAGE, SUBCELLULAR LOCATION,
RP SUBUNIT, AND INTERACTION WITH PSAA AND PASB.
RX PubMed=23221595; DOI=10.1105/tpc.112.106542;
RA Liu J., Yang H., Lu Q., Wen X., Chen F., Peng L., Zhang L., Lu C.;
RT "PsbP-domain protein1, a nuclear-encoded thylakoid lumenal protein, is
RT essential for photosystem I assembly in Arabidopsis.";
RL Plant Cell 24:4992-5006(2012).
CC -!- FUNCTION: Photosystem I assembly factor that assists the proper folding
CC and integration of PsaB and PsaA into the thylakoid membrane.
CC {ECO:0000269|PubMed:23221595}.
CC -!- SUBUNIT: Partially associated with photosystem I (PSI) complex, but is
CC not a subunit of the complex. Interacts with PsaA and PsaB, but not
CC with PasF. {ECO:0000269|PubMed:23221595}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid lumen
CC {ECO:0000269|PubMed:11719511, ECO:0000269|PubMed:23221595}.
CC Note=Associates primarily with stroma-exposed thylakoids.
CC {ECO:0000269|PubMed:23221595}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=3;
CC Name=1;
CC IsoId=O23403-1; Sequence=Displayed;
CC Name=2;
CC IsoId=O23403-2; Sequence=VSP_034344, VSP_034345;
CC Name=3;
CC IsoId=O23403-3; Sequence=VSP_034343;
CC -!- DEVELOPMENTAL STAGE: Highly expressed in very young leaves and then
CC decreases with leaf age. {ECO:0000269|PubMed:23221595}.
CC -!- DISRUPTION PHENOTYPE: Seedling lethal. {ECO:0000269|PubMed:23221595}.
CC -!- SIMILARITY: Belongs to the psbP family. {ECO:0000305}.
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DR EMBL; Z97339; CAB10329.1; -; Genomic_DNA.
DR EMBL; AL161541; CAB78593.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE83612.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE83613.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE83614.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM66920.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM66921.1; -; Genomic_DNA.
DR EMBL; AY085014; AAM61572.1; -; mRNA.
DR EMBL; AK175561; BAD43324.1; -; mRNA.
DR PIR; G71419; G71419.
DR RefSeq; NP_001031646.1; NM_001036569.3. [O23403-3]
DR RefSeq; NP_001328785.1; NM_001341050.1. [O23403-3]
DR RefSeq; NP_001328786.1; NM_001341049.1. [O23403-3]
DR RefSeq; NP_567468.1; NM_117641.3. [O23403-1]
DR RefSeq; NP_974555.1; NM_202826.2. [O23403-2]
DR AlphaFoldDB; O23403; -.
DR SMR; O23403; -.
DR DIP; DIP-58590N; -.
DR IntAct; O23403; 1.
DR STRING; 3702.AT4G15510.1; -.
DR iPTMnet; O23403; -.
DR PaxDb; O23403; -.
DR PRIDE; O23403; -.
DR ProteomicsDB; 249337; -. [O23403-1]
DR EnsemblPlants; AT4G15510.1; AT4G15510.1; AT4G15510. [O23403-1]
DR EnsemblPlants; AT4G15510.2; AT4G15510.2; AT4G15510. [O23403-2]
DR EnsemblPlants; AT4G15510.3; AT4G15510.3; AT4G15510. [O23403-3]
DR EnsemblPlants; AT4G15510.4; AT4G15510.4; AT4G15510. [O23403-3]
DR EnsemblPlants; AT4G15510.5; AT4G15510.5; AT4G15510. [O23403-3]
DR GeneID; 827223; -.
DR Gramene; AT4G15510.1; AT4G15510.1; AT4G15510. [O23403-1]
DR Gramene; AT4G15510.2; AT4G15510.2; AT4G15510. [O23403-2]
DR Gramene; AT4G15510.3; AT4G15510.3; AT4G15510. [O23403-3]
DR Gramene; AT4G15510.4; AT4G15510.4; AT4G15510. [O23403-3]
DR Gramene; AT4G15510.5; AT4G15510.5; AT4G15510. [O23403-3]
DR KEGG; ath:AT4G15510; -.
DR Araport; AT4G15510; -.
DR TAIR; locus:2130295; AT4G15510.
DR eggNOG; ENOG502QU0F; Eukaryota.
DR HOGENOM; CLU_039569_1_2_1; -.
DR InParanoid; O23403; -.
DR OMA; FDGYSFQ; -.
DR PhylomeDB; O23403; -.
DR BioCyc; MetaCyc:AT4G15510-MON; -.
DR PRO; PR:O23403; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; O23403; baseline and differential.
DR Genevisible; O23403; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR.
DR GO; GO:0009543; C:chloroplast thylakoid lumen; IDA:TAIR.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; HDA:TAIR.
DR GO; GO:0019898; C:extrinsic component of membrane; IEA:InterPro.
DR GO; GO:0009654; C:photosystem II oxygen evolving complex; IEA:InterPro.
DR GO; GO:0009579; C:thylakoid; HDA:TAIR.
DR GO; GO:0031977; C:thylakoid lumen; HDA:TAIR.
DR GO; GO:0005509; F:calcium ion binding; IEA:InterPro.
DR GO; GO:0048564; P:photosystem I assembly; IMP:TAIR.
DR InterPro; IPR016123; Mog1/PsbP_a/b/a-sand.
DR InterPro; IPR002683; PsbP_C.
DR Pfam; PF01789; PsbP; 1.
DR SUPFAM; SSF55724; SSF55724; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; Chloroplast; Direct protein sequencing; Plastid;
KW Reference proteome; Thylakoid; Transit peptide.
FT TRANSIT 1..?
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT TRANSIT ?..104
FT /note="Thylakoid"
FT /evidence="ECO:0000269|PubMed:11719511"
FT CHAIN 105..287
FT /note="PsbP domain-containing protein 1, chloroplastic"
FT /id="PRO_0000029587"
FT VAR_SEQ 1..82
FT /note="Missing (in isoform 3)"
FT /evidence="ECO:0000305"
FT /id="VSP_034343"
FT VAR_SEQ 218..229
FT /note="NIKSYANNNELA -> SQSQVPNYILLL (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_034344"
FT VAR_SEQ 230..287
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_034345"
FT CONFLICT 252
FT /note="E -> D (in Ref. 4; AAM61572)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 287 AA; 32266 MW; CFC72EFD53D58CE5 CRC64;
MASSAFAFPS YIITKGASTD SFKSTSLSSS RSLVTDFHLL FSRPISSGPK YQSAKSAKPE
SPVAINCLTD AKQVCAVGRR KSMMMGLLMS GLIVSQANLP TAFASTPVFR EYIDTFDGYS
FKYPQNWIQV RGAGADIFFR DPVVLDENLS VEFSSPSSSN YTSLEDLGSP EEVGKRVLRQ
YLTEFMSTRL GVKRQANILS TSSRVADDGK LYYQVEVNIK SYANNNELAV MPQDRVARLE
WNRRYLAVLG VENDRLYSIR LQTPEKVFLE EEKDLRRVMD SFRVEKI
