PPD4_ARATH
ID PPD4_ARATH Reviewed; 260 AA.
AC O49292; Q94JX3;
DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot.
DT 10-JUN-2008, sequence version 2.
DT 03-AUG-2022, entry version 131.
DE RecName: Full=PsbP domain-containing protein 4, chloroplastic;
DE AltName: Full=OEC23-like protein 5;
DE Flags: Precursor;
GN Name=PPD4; OrderedLocusNames=At1g77090; ORFNames=F22K20.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2-260.
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP PROTEIN SEQUENCE OF 72-88.
RC STRAIN=cv. Columbia;
RX PubMed=11034343; DOI=10.1016/s0014-5793(00)01890-1;
RA Kieselbach T., Bystedt M., Hynds P., Robinson C., Schroeder W.P.;
RT "A peroxidase homologue and novel plastocyanin located by proteomics to the
RT Arabidopsis chloroplast thylakoid lumen.";
RL FEBS Lett. 480:271-276(2000).
RN [6]
RP PROTEIN SEQUENCE OF 72-90, AND SUBCELLULAR LOCATION.
RX PubMed=11719511; DOI=10.1074/jbc.m108575200;
RA Schubert M., Petersson U.A., Haas B.J., Funk C., Schroeder W.P.,
RA Kieselbach T.;
RT "Proteome map of the chloroplast lumen of Arabidopsis thaliana.";
RL J. Biol. Chem. 277:8354-8365(2002).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17827269; DOI=10.1104/pp.107.105866;
RA Ishihara S., Takabayashi A., Ido K., Endo T., Ifuku K., Sato F.;
RT "Distinct functions for the two PsbP-like proteins PPL1 and PPL2 in the
RT chloroplast thylakoid lumen of Arabidopsis.";
RL Plant Physiol. 145:668-679(2007).
RN [8]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND SUBCELLULAR LOCATION [LARGE SCALE
RP ANALYSIS].
RX PubMed=18431481; DOI=10.1371/journal.pone.0001994;
RA Zybailov B., Rutschow H., Friso G., Rudella A., Emanuelsson O., Sun Q.,
RA van Wijk K.J.;
RT "Sorting signals, N-terminal modifications and abundance of the chloroplast
RT proteome.";
RL PLoS ONE 3:E1994-E1994(2008).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid lumen
CC {ECO:0000269|PubMed:11719511, ECO:0000269|PubMed:18431481}.
CC -!- SIMILARITY: Belongs to the psbP family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC00624.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AAK49577.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AC002291; AAC00624.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE35933.1; -; Genomic_DNA.
DR EMBL; AK228434; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AF370571; AAK49577.1; ALT_FRAME; mRNA.
DR PIR; G96799; G96799.
DR RefSeq; NP_565149.2; NM_106359.5.
DR AlphaFoldDB; O49292; -.
DR SMR; O49292; -.
DR STRING; 3702.AT1G77090.1; -.
DR iPTMnet; O49292; -.
DR PaxDb; O49292; -.
DR PRIDE; O49292; -.
DR ProteomicsDB; 249040; -.
DR EnsemblPlants; AT1G77090.1; AT1G77090.1; AT1G77090.
DR GeneID; 844043; -.
DR Gramene; AT1G77090.1; AT1G77090.1; AT1G77090.
DR KEGG; ath:AT1G77090; -.
DR Araport; AT1G77090; -.
DR TAIR; locus:2025292; AT1G77090.
DR eggNOG; ENOG502QVAW; Eukaryota.
DR HOGENOM; CLU_078654_0_0_1; -.
DR InParanoid; O49292; -.
DR OMA; QDWEEVP; -.
DR OrthoDB; 1208878at2759; -.
DR PhylomeDB; O49292; -.
DR BioCyc; MetaCyc:AT1G77090-MON; -.
DR PRO; PR:O49292; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; O49292; baseline and differential.
DR Genevisible; O49292; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR.
DR GO; GO:0009534; C:chloroplast thylakoid; HDA:TAIR.
DR GO; GO:0009543; C:chloroplast thylakoid lumen; IEA:UniProtKB-SubCell.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0019898; C:extrinsic component of membrane; IEA:InterPro.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR GO; GO:0009654; C:photosystem II oxygen evolving complex; IEA:InterPro.
DR GO; GO:0009579; C:thylakoid; HDA:TAIR.
DR GO; GO:0031977; C:thylakoid lumen; HDA:TAIR.
DR GO; GO:0005509; F:calcium ion binding; IEA:InterPro.
DR GO; GO:0015979; P:photosynthesis; IEA:InterPro.
DR InterPro; IPR016123; Mog1/PsbP_a/b/a-sand.
DR InterPro; IPR002683; PsbP_C.
DR Pfam; PF01789; PsbP; 1.
DR SUPFAM; SSF55724; SSF55724; 1.
PE 1: Evidence at protein level;
KW Chloroplast; Direct protein sequencing; Plastid; Reference proteome;
KW Thylakoid; Transit peptide.
FT TRANSIT 1..?
FT /note="Chloroplast"
FT /evidence="ECO:0000305"
FT TRANSIT ?..71
FT /note="Thylakoid"
FT /evidence="ECO:0000269|PubMed:11034343,
FT ECO:0000269|PubMed:11719511"
FT CHAIN 72..260
FT /note="PsbP domain-containing protein 4, chloroplastic"
FT /id="PRO_0000022536"
FT CONFLICT 51
FT /note="V -> G (in Ref. 4; AAK49577)"
FT /evidence="ECO:0000305"
FT CONFLICT 57
FT /note="V -> D (in Ref. 4; AAK49577)"
FT /evidence="ECO:0000305"
FT CONFLICT 62
FT /note="A -> G (in Ref. 4; AAK49577)"
FT /evidence="ECO:0000305"
FT CONFLICT 72
FT /note="V -> D (in Ref. 4; AAK49577)"
FT /evidence="ECO:0000305"
FT CONFLICT 82..83
FT /note="VP -> ET (in Ref. 4; AAK49577)"
FT /evidence="ECO:0000305"
FT CONFLICT 86
FT /note="S -> N (in Ref. 4; AAK49577)"
FT /evidence="ECO:0000305"
FT CONFLICT 103
FT /note="S -> L (in Ref. 4; AAK49577)"
FT /evidence="ECO:0000305"
FT CONFLICT 108
FT /note="V -> D (in Ref. 4; AAK49577)"
FT /evidence="ECO:0000305"
FT CONFLICT 111..112
FT /note="SP -> RT (in Ref. 4; AAK49577)"
FT /evidence="ECO:0000305"
FT CONFLICT 119..129
FT /note="SVPQDWNEVPV -> AGAEDCNEAPA (in Ref. 4; AAK49577)"
FT /evidence="ECO:0000305"
FT CONFLICT 135
FT /note="G -> A (in Ref. 4; AAK49577)"
FT /evidence="ECO:0000305"
FT CONFLICT 139..144
FT /note="IDLRFA -> MDWRCG (in Ref. 4; AAK49577)"
FT /evidence="ECO:0000305"
FT CONFLICT 148..149
FT /note="EG -> QA (in Ref. 4; AAK49577)"
FT /evidence="ECO:0000305"
FT CONFLICT 232
FT /note="Y -> C (in Ref. 4; AAK49577)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 260 AA; 28501 MW; 098720B2ADF006B7 CRC64;
MMETALLRYC VNFSGHKKIS AHQRSNSEIP KTSPGGCEDE WCARVLSRRS VMASGLVSST
TALAFPREGL AVVKQGLLAG RVPGLSEPDE EGWRTYRRPD EKSGGHGVGW SPIIPYAFSV
PQDWNEVPVS IADLGGTEID LRFASPKEGR LSVIVAPVLR FADNLGDDVK IENIGQPAKV
INAFGPEVIG ENVEGKVLSS NVAEHDGRLY YQFELEPPHV LITATAAGNR LYLFSVTGNG
LQWKRHYKDL KRIASSFRIV
