PPD6_ARATH
ID PPD6_ARATH Reviewed; 262 AA.
AC Q9LXX5; Q0WQH4;
DT 10-JUN-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=PsbP domain-containing protein 6, chloroplastic;
DE AltName: Full=OEC23-like protein 1;
DE Flags: Precursor;
GN Name=PPD6; OrderedLocusNames=At3g56650; ORFNames=T5P19.300;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP PROTEIN SEQUENCE OF 68-87, AND SUBCELLULAR LOCATION.
RX PubMed=11719511; DOI=10.1074/jbc.m108575200;
RA Schubert M., Petersson U.A., Haas B.J., Funk C., Schroeder W.P.,
RA Kieselbach T.;
RT "Proteome map of the chloroplast lumen of Arabidopsis thaliana.";
RL J. Biol. Chem. 277:8354-8365(2002).
RN [5]
RP PROTEIN SEQUENCE OF 68-72, AND SUBCELLULAR LOCATION.
RC STRAIN=cv. Columbia; TISSUE=Leaf;
RX PubMed=11826309; DOI=10.1105/tpc.010304;
RA Peltier J.-B., Emanuelsson O., Kalume D.E., Ytterberg J., Friso G.,
RA Rudella A., Liberles D.A., Soederberg L., Roepstorff P., von Heijne G.,
RA van Wijk K.J.;
RT "Central functions of the lumenal and peripheral thylakoid proteome of
RT Arabidopsis determined by experimentation and genome-wide prediction.";
RL Plant Cell 14:211-236(2002).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17827269; DOI=10.1104/pp.107.105866;
RA Ishihara S., Takabayashi A., Ido K., Endo T., Ifuku K., Sato F.;
RT "Distinct functions for the two PsbP-like proteins PPL1 and PPL2 in the
RT chloroplast thylakoid lumen of Arabidopsis.";
RL Plant Physiol. 145:668-679(2007).
RN [7]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND SUBCELLULAR LOCATION [LARGE SCALE
RP ANALYSIS].
RX PubMed=18431481; DOI=10.1371/journal.pone.0001994;
RA Zybailov B., Rutschow H., Friso G., Rudella A., Emanuelsson O., Sun Q.,
RA van Wijk K.J.;
RT "Sorting signals, N-terminal modifications and abundance of the chloroplast
RT proteome.";
RL PLoS ONE 3:E1994-E1994(2008).
RN [8]
RP FUNCTION, DISULFIDE BOND, AND IDENTIFICATION BY MASS SPECTROMETRY.
RX PubMed=20049866; DOI=10.1002/pmic.200900654;
RA Hall M., Mata-Cabana A., Akerlund H.E., Florencio F.J., Schroeder W.P.,
RA Lindahl M., Kieselbach T.;
RT "Thioredoxin targets of the plant chloroplast lumen and their implications
RT for plastid function.";
RL Proteomics 10:987-1001(2010).
RN [9]
RP PRELIMINARY CRYSTALLIZATION.
RX PubMed=22442221; DOI=10.1107/s1744309111042023;
RA Hall M., Kieselbach T., Sauer U.H., Schroeder W.P.;
RT "Purification, crystallization and preliminary X-ray analysis of PPD6, a
RT PsbP-domain protein from Arabidopsis thaliana.";
RL Acta Crystallogr. F 68:278-280(2012).
CC -!- FUNCTION: May be involved in the redox regulation of photosystem II.
CC {ECO:0000269|PubMed:20049866}.
CC -!- INTERACTION:
CC Q9LXX5; P0AA25: trxA; Xeno; NbExp=2; IntAct=EBI-2895738, EBI-368542;
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid lumen
CC {ECO:0000269|PubMed:11719511, ECO:0000269|PubMed:11826309,
CC ECO:0000269|PubMed:18431481}.
CC -!- SIMILARITY: Belongs to the psbP family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF00625.1; Type=Frameshift; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AL163972; CAB88068.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE79548.1; -; Genomic_DNA.
DR EMBL; AK228723; BAF00625.1; ALT_FRAME; mRNA.
DR PIR; T49066; T49066.
DR RefSeq; NP_191224.1; NM_115524.3.
DR AlphaFoldDB; Q9LXX5; -.
DR IntAct; Q9LXX5; 2.
DR STRING; 3702.AT3G56650.1; -.
DR PaxDb; Q9LXX5; -.
DR PRIDE; Q9LXX5; -.
DR ProteomicsDB; 249340; -.
DR EnsemblPlants; AT3G56650.1; AT3G56650.1; AT3G56650.
DR GeneID; 824832; -.
DR Gramene; AT3G56650.1; AT3G56650.1; AT3G56650.
DR KEGG; ath:AT3G56650; -.
DR Araport; AT3G56650; -.
DR TAIR; locus:2102544; AT3G56650.
DR eggNOG; ENOG502QT2I; Eukaryota.
DR HOGENOM; CLU_061284_0_0_1; -.
DR InParanoid; Q9LXX5; -.
DR OMA; CQPRCDE; -.
DR OrthoDB; 1057786at2759; -.
DR PhylomeDB; Q9LXX5; -.
DR BioCyc; MetaCyc:AT3G56650-MON; -.
DR PRO; PR:Q9LXX5; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LXX5; baseline and differential.
DR Genevisible; Q9LXX5; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR.
DR GO; GO:0009534; C:chloroplast thylakoid; HDA:TAIR.
DR GO; GO:0009543; C:chloroplast thylakoid lumen; IEA:UniProtKB-SubCell.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0019898; C:extrinsic component of membrane; IEA:InterPro.
DR GO; GO:0009654; C:photosystem II oxygen evolving complex; IEA:InterPro.
DR GO; GO:0009579; C:thylakoid; HDA:TAIR.
DR GO; GO:0031977; C:thylakoid lumen; HDA:TAIR.
DR GO; GO:0005509; F:calcium ion binding; IEA:InterPro.
DR GO; GO:0015979; P:photosynthesis; IEA:InterPro.
DR InterPro; IPR016123; Mog1/PsbP_a/b/a-sand.
DR InterPro; IPR002683; PsbP_C.
DR Pfam; PF01789; PsbP; 1.
DR SUPFAM; SSF55724; SSF55724; 1.
PE 1: Evidence at protein level;
KW Chloroplast; Direct protein sequencing; Disulfide bond; Plastid;
KW Reference proteome; Thylakoid; Transit peptide.
FT TRANSIT 1..?
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT TRANSIT ?..67
FT /note="Thylakoid"
FT /evidence="ECO:0000269|PubMed:11719511,
FT ECO:0000269|PubMed:11826309"
FT CHAIN 68..262
FT /note="PsbP domain-containing protein 6, chloroplastic"
FT /id="PRO_0000341583"
FT DISULFID 128..132
FT /evidence="ECO:0000269|PubMed:20049866"
SQ SEQUENCE 262 AA; 28630 MW; 9D402FA4A9DC083E CRC64;
MATASLVPTS KIFSVSPKSS ASIKARSRVV VASSQQQQQP RRRELLLKSA VAIPAILQLK
EAPISAAREV EVGSYLPLSP SDPSFVLFKA KPSDTPALRA GNVQPYQFVL PPNWKQLRIA
NILSGNYCQP KCAEPWIEVK FENEKQGKVQ VVASPLIRLT NKPNATIEDL GEPEKVIASL
GPFVTGNSYD SDELLKTSIE KIGDQTYYKY VLETPFALTG SHNLAKATAK GSTVVLFVVS
ATEKQWQSSQ KTLEAILDSF QL
