PPDB_ECOLI
ID PPDB_ECOLI Reviewed; 187 AA.
AC P08371; Q2MA12;
DT 01-AUG-1988, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1992, sequence version 2.
DT 03-AUG-2022, entry version 140.
DE RecName: Full=Prepilin peptidase-dependent protein B;
DE Flags: Precursor;
GN Name=ppdB; Synonyms=ygdC; OrderedLocusNames=b2825, JW5451;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=3520484; DOI=10.1093/nar/14.11.4437;
RA Finch P.W., Wilson R.E., Brown K., Hickson I.D., Tomkinson A.E.,
RA Emmerson P.T.;
RT "Complete nucleotide sequence of the Escherichia coli recC gene and of the
RT thyA-recC intergenic region.";
RL Nucleic Acids Res. 14:4437-4451(1986).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [4]
RP IDENTIFICATION.
RX PubMed=7934814; DOI=10.1111/j.1365-2958.1993.tb01949.x;
RA Hobbs M., Mattick J.S.;
RT "Common components in the assembly of type 4 fimbriae, DNA transfer
RT systems, filamentous phage and protein-secretion apparatus: a general
RT system for the formation of surface-associated protein complexes.";
RL Mol. Microbiol. 10:233-243(1993).
CC -!- FUNCTION: Not yet known.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000255}; Single-pass membrane
CC protein {ECO:0000255}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAA27601.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; X03966; CAA27601.1; ALT_INIT; Genomic_DNA.
DR EMBL; U29581; AAB40472.1; -; Genomic_DNA.
DR EMBL; U00096; AAC75864.1; -; Genomic_DNA.
DR EMBL; AP009048; BAE76894.1; -; Genomic_DNA.
DR PIR; B65065; QQEC30.
DR RefSeq; NP_417302.1; NC_000913.3.
DR RefSeq; WP_001144315.1; NZ_LN832404.1.
DR AlphaFoldDB; P08371; -.
DR BioGRID; 4261793; 129.
DR STRING; 511145.b2825; -.
DR PaxDb; P08371; -.
DR PRIDE; P08371; -.
DR DNASU; 948985; -.
DR EnsemblBacteria; AAC75864; AAC75864; b2825.
DR EnsemblBacteria; BAE76894; BAE76894; BAE76894.
DR GeneID; 948985; -.
DR KEGG; ecj:JW5451; -.
DR KEGG; eco:b2825; -.
DR PATRIC; fig|511145.12.peg.2923; -.
DR EchoBASE; EB1145; -.
DR eggNOG; COG4795; Bacteria.
DR HOGENOM; CLU_090952_0_0_6; -.
DR OMA; RRAGYCQ; -.
DR PhylomeDB; P08371; -.
DR BioCyc; EcoCyc:EG11156-MON; -.
DR PRO; PR:P08371; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0015628; P:protein secretion by the type II secretion system; IBA:GO_Central.
DR InterPro; IPR012902; N_methyl_site.
DR InterPro; IPR016419; Prepilin_Pept-dep_B_prd.
DR Pfam; PF07963; N_methyl; 1.
DR PIRSF; PIRSF004525; Pilin_peptidase-dep_B_prd; 1.
DR TIGRFAMs; TIGR02532; IV_pilin_GFxxxE; 1.
DR PROSITE; PS00409; PROKAR_NTER_METHYL; 1.
PE 3: Inferred from homology;
KW Membrane; Methylation; Reference proteome; Transmembrane;
KW Transmembrane helix.
FT PROPEP 1..7
FT /note="Leader sequence"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01070"
FT /id="PRO_0000024276"
FT CHAIN 8..187
FT /note="Prepilin peptidase-dependent protein B"
FT /id="PRO_0000024277"
FT TRANSMEM 8..28
FT /note="Helical"
FT /evidence="ECO:0000255"
FT MOD_RES 8
FT /note="N-methylphenylalanine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01070"
SQ SEQUENCE 187 AA; 20520 MW; 433303D846D786F0 CRC64;
MPVKEQGFSL LEVLIAMAIS SVLLLGAARF LPALQRESLT STRKLALEDE IWLRVFTVAK
HLQRAGYCHG ICTGEGLEIV GQGDCVIVQW DANSNGIWDR EPVKESDQIG FRLKEHVLET
LRGATSCEGK GWDKVTNPDA IIIDTFQVVR QDVSGFSPVL TVNMRAASKS EPQTVVNASY
SVTGFNL