PPDD_ECOLI
ID PPDD_ECOLI Reviewed; 146 AA.
AC P36647; Q8KMZ6;
DT 01-JUN-1994, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-1995, sequence version 2.
DT 03-AUG-2022, entry version 146.
DE RecName: Full=Prepilin peptidase-dependent protein D;
DE Flags: Precursor;
GN Name=ppdD; OrderedLocusNames=b0108, JW0104;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP PRELIMINARY NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=K12;
RA Bhatia R.S.;
RL Submitted (NOV-1993) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=K12;
RX PubMed=7959070; DOI=10.1016/0378-1119(94)90851-6;
RA Whitchurch C.B., Mattick J.S.;
RT "Escherichia coli contains a set of genes homologous to those involved in
RT protein secretion, DNA uptake and the assembly of type-4 fimbriae in other
RT bacteria.";
RL Gene 150:9-15(1994).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=8202364; DOI=10.1093/nar/22.9.1637;
RA Fujita N., Mori H., Yura T., Ishihama A.;
RT "Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-
RT 4.1 min (110,917-193,643 bp) region.";
RL Nucleic Acids Res. 22:1637-1639(1994).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], AND SEQUENCE REVISION TO
RP 1-5.
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [6]
RP FUNCTION, AND PROTEOLYTIC CLEAVAGE.
RC STRAIN=K12;
RX PubMed=10633126; DOI=10.1128/jb.182.3.848-854.2000;
RA Sauvonnet N., Gounon P., Pugsley A.P.;
RT "PpdD type IV pilin of Escherichia coli K-12 can Be assembled into pili in
RT Pseudomonas aeruginosa.";
RL J. Bacteriol. 182:848-854(2000).
CC -!- FUNCTION: Major component of the type IV pilus (T4P) that plays a role
CC in cell adhesion and motility. Not produced when grown under standard
CC laboratory conditions. {ECO:0000269|PubMed:10633126}.
CC -!- SUBCELLULAR LOCATION: Fimbrium. Membrane {ECO:0000255}; Single-pass
CC membrane protein {ECO:0000255}.
CC -!- SIMILARITY: Belongs to the N-Me-Phe pilin family. {ECO:0000305}.
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DR EMBL; L20834; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; L28105; AAC36923.1; -; Genomic_DNA.
DR EMBL; U00096; AAC73219.1; -; Genomic_DNA.
DR EMBL; AP009048; BAB96678.2; -; Genomic_DNA.
DR PIR; D64733; D64733.
DR RefSeq; NP_414650.1; NC_000913.3.
DR RefSeq; WP_000360904.1; NZ_SSZK01000004.1.
DR AlphaFoldDB; P36647; -.
DR BMRB; P36647; -.
DR SMR; P36647; -.
DR BioGRID; 4259343; 5.
DR STRING; 511145.b0108; -.
DR PaxDb; P36647; -.
DR EnsemblBacteria; AAC73219; AAC73219; b0108.
DR EnsemblBacteria; BAB96678; BAB96678; BAB96678.
DR GeneID; 945817; -.
DR KEGG; ecj:JW0104; -.
DR KEGG; eco:b0108; -.
DR PATRIC; fig|1411691.4.peg.2174; -.
DR EchoBASE; EB2031; -.
DR eggNOG; COG4969; Bacteria.
DR HOGENOM; CLU_091705_4_1_6; -.
DR InParanoid; P36647; -.
DR OMA; RILTWDC; -.
DR PhylomeDB; P36647; -.
DR BioCyc; EcoCyc:EG12107-MON; -.
DR PRO; PR:P36647; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0044096; C:type IV pilus; IBA:GO_Central.
DR GO; GO:0043683; P:type IV pilus assembly; IBA:GO_Central.
DR GO; GO:0043107; P:type IV pilus-dependent motility; IBA:GO_Central.
DR InterPro; IPR012902; N_methyl_site.
DR InterPro; IPR045584; Pilin-like.
DR Pfam; PF07963; N_methyl; 1.
DR SUPFAM; SSF54523; SSF54523; 1.
DR TIGRFAMs; TIGR02532; IV_pilin_GFxxxE; 1.
DR PROSITE; PS00409; PROKAR_NTER_METHYL; 1.
PE 1: Evidence at protein level;
KW Fimbrium; Membrane; Methylation; Reference proteome; Transmembrane;
KW Transmembrane helix.
FT PROPEP 1..6
FT /note="Leader sequence"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01070,
FT ECO:0000269|PubMed:10633126"
FT /id="PRO_0000024280"
FT CHAIN 7..146
FT /note="Prepilin peptidase-dependent protein D"
FT /id="PRO_0000024281"
FT TRANSMEM 7..27
FT /note="Helical"
FT /evidence="ECO:0000255"
FT MOD_RES 7
FT /note="N-methylphenylalanine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01070"
FT CONFLICT 1..5
FT /note="MDKQR -> DGQAT (in Ref. 3)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 146 AA; 15622 MW; 7905D78A1E8B17A0 CRC64;
MDKQRGFTLI ELMVVIGIIA ILSAIGIPAY QNYLRKAALT DMLQTFVPYR TAVELCALEH
GGLDTCDGGS NGIPSPTTTR YVSAMSVAKG VVSLTGQESL NGLSVVMTPG WDNANGVTGW
TRNCNIQSDS ALQQACEDVF RFDDAN