PPK1_VIBCH
ID PPK1_VIBCH Reviewed; 701 AA.
AC Q9KU07; O86073;
DT 27-APR-2001, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=Polyphosphate kinase {ECO:0000255|HAMAP-Rule:MF_00347};
DE EC=2.7.4.1 {ECO:0000255|HAMAP-Rule:MF_00347};
DE AltName: Full=ATP-polyphosphate phosphotransferase {ECO:0000255|HAMAP-Rule:MF_00347};
DE AltName: Full=Polyphosphoric acid kinase {ECO:0000255|HAMAP-Rule:MF_00347};
GN Name=ppk {ECO:0000255|HAMAP-Rule:MF_00347}; OrderedLocusNames=VC_0723;
OS Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC Vibrio.
OX NCBI_TaxID=243277;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=El Tor Inaba 92A1552;
RA Ogawa N., Fraley C., Kornberg A.;
RT "The polyphosphate kinase and exopolyphosphatase genes of Vibrio
RT cholerae.";
RL Submitted (AUG-1998) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 39315 / El Tor Inaba N16961;
RX PubMed=10952301; DOI=10.1038/35020000;
RA Heidelberg J.F., Eisen J.A., Nelson W.C., Clayton R.A., Gwinn M.L.,
RA Dodson R.J., Haft D.H., Hickey E.K., Peterson J.D., Umayam L.A., Gill S.R.,
RA Nelson K.E., Read T.D., Tettelin H., Richardson D.L., Ermolaeva M.D.,
RA Vamathevan J.J., Bass S., Qin H., Dragoi I., Sellers P., McDonald L.A.,
RA Utterback T.R., Fleischmann R.D., Nierman W.C., White O., Salzberg S.L.,
RA Smith H.O., Colwell R.R., Mekalanos J.J., Venter J.C., Fraser C.M.;
RT "DNA sequence of both chromosomes of the cholera pathogen Vibrio
RT cholerae.";
RL Nature 406:477-483(2000).
CC -!- FUNCTION: Catalyzes the reversible transfer of the terminal phosphate
CC of ATP to form a long-chain polyphosphate (polyP). {ECO:0000255|HAMAP-
CC Rule:MF_00347}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=[phosphate](n) + ATP = [phosphate](n+1) + ADP;
CC Xref=Rhea:RHEA:19573, Rhea:RHEA-COMP:9859, Rhea:RHEA-COMP:14280,
CC ChEBI:CHEBI:16838, ChEBI:CHEBI:30616, ChEBI:CHEBI:456216; EC=2.7.4.1;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_00347};
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_00347};
CC -!- PTM: An intermediate of this reaction is the autophosphorylated ppk in
CC which a phosphate is covalently linked to a histidine residue through a
CC N-P bond. {ECO:0000255|HAMAP-Rule:MF_00347}.
CC -!- SIMILARITY: Belongs to the polyphosphate kinase 1 (PPK1) family.
CC {ECO:0000255|HAMAP-Rule:MF_00347}.
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DR EMBL; AF083928; AAC32883.1; -; Genomic_DNA.
DR EMBL; AE003852; AAF93888.1; -; Genomic_DNA.
DR PIR; D82289; D82289.
DR RefSeq; NP_230372.1; NC_002505.1.
DR RefSeq; WP_001271572.1; NZ_LT906614.1.
DR AlphaFoldDB; Q9KU07; -.
DR SMR; Q9KU07; -.
DR STRING; 243277.VC_0723; -.
DR DNASU; 2615732; -.
DR EnsemblBacteria; AAF93888; AAF93888; VC_0723.
DR GeneID; 57739438; -.
DR KEGG; vch:VC_0723; -.
DR PATRIC; fig|243277.26.peg.691; -.
DR eggNOG; COG0855; Bacteria.
DR HOGENOM; CLU_009678_6_1_6; -.
DR OMA; NIKWARK; -.
DR BioCyc; VCHO:VC0723-MON; -.
DR Proteomes; UP000000584; Chromosome 1.
DR GO; GO:0009358; C:polyphosphate kinase complex; IEA:InterPro.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0008976; F:polyphosphate kinase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0019637; P:organophosphate metabolic process; IEA:UniProt.
DR GO; GO:0016310; P:phosphorylation; IEA:UniProtKB-KW.
DR GO; GO:0006799; P:polyphosphate biosynthetic process; IEA:UniProtKB-UniRule.
DR Gene3D; 3.30.1840.10; -; 1.
DR HAMAP; MF_00347; Polyphosphate_kinase; 1.
DR InterPro; IPR001736; PLipase_D/transphosphatidylase.
DR InterPro; IPR003414; PP_kinase.
DR InterPro; IPR041108; PP_kinase_C_1.
DR InterPro; IPR024953; PP_kinase_middle.
DR InterPro; IPR036830; PP_kinase_middle_dom_sf.
DR InterPro; IPR025200; PPK_C_dom2.
DR InterPro; IPR025198; PPK_N_dom.
DR InterPro; IPR036832; PPK_N_dom_sf.
DR PANTHER; PTHR30218; PTHR30218; 1.
DR Pfam; PF02503; PP_kinase; 1.
DR Pfam; PF13090; PP_kinase_C; 1.
DR Pfam; PF17941; PP_kinase_C_1; 1.
DR Pfam; PF13089; PP_kinase_N; 1.
DR PIRSF; PIRSF015589; PP_kinase; 1.
DR SUPFAM; SSF140356; SSF140356; 1.
DR TIGRFAMs; TIGR03705; poly_P_kin; 1.
DR PROSITE; PS50035; PLD; 2.
PE 3: Inferred from homology;
KW ATP-binding; Kinase; Magnesium; Metal-binding; Nucleotide-binding;
KW Phosphoprotein; Reference proteome; Repeat; Transferase.
FT CHAIN 1..701
FT /note="Polyphosphate kinase"
FT /id="PRO_0000128666"
FT DOMAIN 428..462
FT /note="PLD phosphodiesterase 1"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00347"
FT DOMAIN 585..615
FT /note="PLD phosphodiesterase 2"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00347"
FT ACT_SITE 433
FT /note="Phosphohistidine intermediate"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00347"
FT BINDING 45
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00347"
FT BINDING 373
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00347"
FT BINDING 403
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00347"
FT BINDING 466
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00347"
FT BINDING 562
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00347"
FT BINDING 590
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00347"
FT CONFLICT 130..131
FT /note="EV -> VM (in Ref. 1; AAC32883)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 701 AA; 81645 MW; 8BDECAEE7687C9D4 CRC64;
MSADKLYIDK ELSWLSFNER VLQEAADKTV PLIERIRFLG IFSNNLDEFY KVRFADVKRQ
ILINRERGGN DISKHLLSRM QSKALKLNQD FDNLYNELIL EMARRRIFLV NETQLDEIQL
KWVKKYFHKE VLPHVTPIML RDDIDVMQFL KDEYAYIAVE MRSGDEFKYA LIEIPTDQLP
RFVMLPEQKG KRRKTIILLD NIIRLCLDEI FRGFYDYDTL NGYAMKMTRD AEYDLRHEVE
YSLLEQMSEG LSQRLTALPV RFVYEREMPE AMLKFLCYKL KISHYDSLIP GGRYHNFKDF
ISFPNVGRDY LENKPLPPMT CADFEGYANA FDAIRAQDIL LHYPYHSFEH MTELVRQASF
DPKVVSIKIN IYRVAKDSKL MNSLVDAVHN GKRVVVVVEL QARFDEEANI EWSRILTDAG
VHVIFGVPGM KIHAKLLLIT RKEGDEFVRY AHIGTGNFHE RTARIYTDFA LLTANQELAA
EVRAVFGYIE NPFRPVKFNH LIVSPRNSRT QIYRLLDSEI ANAKAGKKAA ITLKVNNLVD
KGLINKLYGA SAAGVKIRMI IRGMCSLVPG VEGVSDNIEI ISIIDRFLEH PRVLVVHNDG
NPQVFISSAD WMERNIDHRI EVMAPIRDER LKQRIIDILN IQFIDTVKAR RIDKEMSNQY
VERGNRRKVR SQIAIYDYLK NVEKQTRKAK GQQETNDNSS Q