PPR10_ARATH
ID PPR10_ARATH Reviewed; 665 AA.
AC Q9MAT2;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 119.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g04840;
GN Name=PCMP-H64; OrderedLocusNames=At1g04840; ORFNames=F13M7.17;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC004809; AAF40466.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE27750.1; -; Genomic_DNA.
DR PIR; F86181; F86181.
DR RefSeq; NP_171976.1; NM_100362.2.
DR AlphaFoldDB; Q9MAT2; -.
DR SMR; Q9MAT2; -.
DR iPTMnet; Q9MAT2; -.
DR PaxDb; Q9MAT2; -.
DR PRIDE; Q9MAT2; -.
DR ProteomicsDB; 234796; -.
DR EnsemblPlants; AT1G04840.1; AT1G04840.1; AT1G04840.
DR GeneID; 839402; -.
DR Gramene; AT1G04840.1; AT1G04840.1; AT1G04840.
DR KEGG; ath:AT1G04840; -.
DR Araport; AT1G04840; -.
DR TAIR; locus:2010652; AT1G04840.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR InParanoid; Q9MAT2; -.
DR OMA; HPGSYVF; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9MAT2; -.
DR PRO; PR:Q9MAT2; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9MAT2; baseline and differential.
DR Genevisible; Q9MAT2; AT.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR045215; PPR_prot_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR24015; PTHR24015; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 1.
DR SUPFAM; SSF48452; SSF48452; 2.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 11.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..665
FT /note="Pentatricopeptide repeat-containing protein
FT At1g04840"
FT /id="PRO_0000342751"
FT REPEAT 90..124
FT /note="PPR 1"
FT REPEAT 125..155
FT /note="PPR 2"
FT REPEAT 160..190
FT /note="PPR 3"
FT REPEAT 195..229
FT /note="PPR 4"
FT REPEAT 230..256
FT /note="PPR 5"
FT REPEAT 257..291
FT /note="PPR 6"
FT REPEAT 292..326
FT /note="PPR 7"
FT REPEAT 327..357
FT /note="PPR 8"
FT REPEAT 358..392
FT /note="PPR 9"
FT REPEAT 393..423
FT /note="PPR 10"
FT REPEAT 429..459
FT /note="PPR 11"
FT REGION 464..539
FT /note="Type E motif"
FT REGION 540..570
FT /note="Type E(+) motif"
FT REGION 571..665
FT /note="Type DYW motif"
SQ SEQUENCE 665 AA; 75105 MW; B99B38B7A7E4A765 CRC64;
MKSLSVIFKP KSSPAKIYFP ADRQASPDES HFISLIHACK DTASLRHVHA QILRRGVLSS
RVAAQLVSCS SLLKSPDYSL SIFRNSEERN PFVLNALIRG LTENARFESS VRHFILMLRL
GVKPDRLTFP FVLKSNSKLG FRWLGRALHA ATLKNFVDCD SFVRLSLVDM YAKTGQLKHA
FQVFEESPDR IKKESILIWN VLINGYCRAK DMHMATTLFR SMPERNSGSW STLIKGYVDS
GELNRAKQLF ELMPEKNVVS WTTLINGFSQ TGDYETAIST YFEMLEKGLK PNEYTIAAVL
SACSKSGALG SGIRIHGYIL DNGIKLDRAI GTALVDMYAK CGELDCAATV FSNMNHKDIL
SWTAMIQGWA VHGRFHQAIQ CFRQMMYSGE KPDEVVFLAV LTACLNSSEV DLGLNFFDSM
RLDYAIEPTL KHYVLVVDLL GRAGKLNEAH ELVENMPINP DLTTWAALYR ACKAHKGYRR
AESVSQNLLE LDPELCGSYI FLDKTHASKG NIQDVEKRRL SLQKRIKERS LGWSYIELDG
QLNKFSAGDY SHKLTQEIGL KLDEIISLAI QKGYNPGADW SIHDIEEEEK ENVTGIHSEK
LALTLGFLRT APGTTIRIIK NLRICGDCHS LMKYVSKISQ RDILLRDARQ FHHFKDGRCS
CGDYW
