PPR11_ARATH
ID PPR11_ARATH Reviewed; 504 AA.
AC Q9SYK1;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g05600;
GN OrderedLocusNames=At1g05600; ORFNames=F3F20.5;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Cheuk R.F., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (DEC-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007153; AAD30626.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE27862.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE27863.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM58120.1; -; Genomic_DNA.
DR EMBL; BT015830; AAU94393.1; -; mRNA.
DR EMBL; BT020451; AAW30029.1; -; mRNA.
DR PIR; A86190; A86190.
DR RefSeq; NP_001184914.1; NM_001197985.2.
DR RefSeq; NP_001318928.1; NM_001331559.1.
DR RefSeq; NP_172051.1; NM_100440.2.
DR AlphaFoldDB; Q9SYK1; -.
DR SMR; Q9SYK1; -.
DR BioGRID; 22307; 1.
DR STRING; 3702.AT1G05600.2; -.
DR PaxDb; Q9SYK1; -.
DR PRIDE; Q9SYK1; -.
DR EnsemblPlants; AT1G05600.1; AT1G05600.1; AT1G05600.
DR EnsemblPlants; AT1G05600.2; AT1G05600.2; AT1G05600.
DR EnsemblPlants; AT1G05600.3; AT1G05600.3; AT1G05600.
DR GeneID; 837065; -.
DR Gramene; AT1G05600.1; AT1G05600.1; AT1G05600.
DR Gramene; AT1G05600.2; AT1G05600.2; AT1G05600.
DR Gramene; AT1G05600.3; AT1G05600.3; AT1G05600.
DR KEGG; ath:AT1G05600; -.
DR Araport; AT1G05600; -.
DR TAIR; locus:2031998; AT1G05600.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_041846_0_0_1; -.
DR InParanoid; Q9SYK1; -.
DR OMA; HNDAVHS; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9SYK1; -.
DR PRO; PR:Q9SYK1; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SYK1; baseline and differential.
DR Genevisible; Q9SYK1; AT.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 2.
DR TIGRFAMs; TIGR00756; PPR; 8.
DR PROSITE; PS51375; PPR; 10.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat.
FT CHAIN 1..504
FT /note="Pentatricopeptide repeat-containing protein
FT At1g05600"
FT /id="PRO_0000342752"
FT REPEAT 45..79
FT /note="PPR 1"
FT REPEAT 80..114
FT /note="PPR 2"
FT REPEAT 115..145
FT /note="PPR 3"
FT REPEAT 151..185
FT /note="PPR 4"
FT REPEAT 186..216
FT /note="PPR 5"
FT REPEAT 225..259
FT /note="PPR 6"
FT REPEAT 260..296
FT /note="PPR 7"
FT REPEAT 297..331
FT /note="PPR 8"
FT REPEAT 332..367
FT /note="PPR 9"
FT REPEAT 368..398
FT /note="PPR 10"
FT REPEAT 404..438
FT /note="PPR 11"
FT REPEAT 439..473
FT /note="PPR 12"
SQ SEQUENCE 504 AA; 57269 MW; 31D060CFDA3D1A09 CRC64;
MSVVRWPRVL TPSLLSQILK KQKNPVTALK LFEEAKERFP SYGHNGSVYA TMIDILGKSN
RVLEMKYVIE RMKEDSCECK DSVFASVIRT FSRAGRLEDA ISLFKSLHEF NCVNWSLSFD
TLLQEMVKES ELEAACHIFR KYCYGWEVNS RITALNLLMK VLCQVNRSDL ASQVFQEMNY
QGCYPDRDSY RILMKGFCLE GKLEEATHLL YSMFWRISQK GSGEDIVVYR ILLDALCDAG
EVDDAIEILG KILRKGLKAP KRCYHHIEAG HWESSSEGIE RVKRLLTETL IRGAIPCLDS
YSAMATDLFE EGKLVEGEEV LLAMRSKGFE PTPFIYGAKV KALCRAGKLK EAVSVINKEM
MQGHCLPTVG VYNVLIKGLC DDGKSMEAVG YLKKMSKQVS CVANEETYQT LVDGLCRDGQ
FLEASQVMEE MLIKSHFPGV ETYHMMIKGL CDMDRRYEAV MWLEEMVSQD MVPESSVWKA
LAESVCFCAI DVVEILEHLI SSKR
