PPR12_ARATH
ID PPR12_ARATH Reviewed; 741 AA.
AC Q0WVK7; Q9SYK8;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-SEP-2006, sequence version 1.
DT 25-MAY-2022, entry version 91.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g05670, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g05670; ORFNames=F3F20.12;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD30619.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At1g05670 and At1g05675.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC007153; AAD30619.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE27873.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE27874.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM59910.1; -; Genomic_DNA.
DR EMBL; AK226740; BAE98841.1; -; mRNA.
DR PIR; H86190; H86190.
DR RefSeq; NP_001154307.2; NM_001160835.3.
DR RefSeq; NP_001318929.1; NM_001331562.1.
DR RefSeq; NP_172058.2; NM_100447.7.
DR AlphaFoldDB; Q0WVK7; -.
DR SMR; Q0WVK7; -.
DR BioGRID; 22316; 1.
DR STRING; 3702.AT1G05670.2; -.
DR CAZy; GT1; Glycosyltransferase Family 1.
DR iPTMnet; Q0WVK7; -.
DR PaxDb; Q0WVK7; -.
DR PRIDE; Q0WVK7; -.
DR EnsemblPlants; AT1G05670.1; AT1G05670.1; AT1G05670.
DR EnsemblPlants; AT1G05670.2; AT1G05670.2; AT1G05670.
DR EnsemblPlants; AT1G05670.3; AT1G05670.3; AT1G05670.
DR GeneID; 837074; -.
DR Gramene; AT1G05670.1; AT1G05670.1; AT1G05670.
DR Gramene; AT1G05670.2; AT1G05670.2; AT1G05670.
DR Gramene; AT1G05670.3; AT1G05670.3; AT1G05670.
DR KEGG; ath:AT1G05670; -.
DR Araport; AT1G05670; -.
DR TAIR; locus:2031973; AT1G05670.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q0WVK7; -.
DR OMA; KNTCSYN; -.
DR OrthoDB; 1344243at2759; -.
DR PRO; PR:Q0WVK7; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q0WVK7; baseline and differential.
DR Genevisible; Q0WVK7; AT.
DR GO; GO:0005783; C:endoplasmic reticulum; IDA:TAIR.
DR GO; GO:0005794; C:Golgi apparatus; IDA:TAIR.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; -; 6.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 5.
DR TIGRFAMs; TIGR00756; PPR; 13.
DR PROSITE; PS51375; PPR; 14.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..21
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 22..741
FT /note="Pentatricopeptide repeat-containing protein
FT At1g05670, mitochondrial"
FT /id="PRO_0000342753"
FT REPEAT 174..208
FT /note="PPR 1"
FT REPEAT 209..244
FT /note="PPR 2"
FT REPEAT 245..279
FT /note="PPR 3"
FT REPEAT 280..314
FT /note="PPR 4"
FT REPEAT 315..349
FT /note="PPR 5"
FT REPEAT 350..384
FT /note="PPR 6"
FT REPEAT 385..419
FT /note="PPR 7"
FT REPEAT 420..454
FT /note="PPR 8"
FT REPEAT 455..489
FT /note="PPR 9"
FT REPEAT 490..524
FT /note="PPR 10"
FT REPEAT 525..559
FT /note="PPR 11"
FT REPEAT 560..594
FT /note="PPR 12"
FT REPEAT 595..629
FT /note="PPR 13"
FT REPEAT 630..664
FT /note="PPR 14"
FT REPEAT 665..699
FT /note="PPR 15"
SQ SEQUENCE 741 AA; 84552 MW; 3895C4D649F23E5A CRC64;
MKKPFTGLLM KRGTLSSFRN FIQLFSLQSR GLSFSTLTDT RPFPDYSPKK ASVRDTEFVH
QITNVIKLRR AEPLRRSLKP YECKFKTDHL IWVLMKIKCD YRLVLDFFDW ARSRRDSNLE
SLCIVIHLAV ASKDLKVAQS LISSFWERPK LNVTDSFVQF FDLLVYTYKD WGSDPRVFDV
FFQVLVDFGL LREARRVFEK MLNYGLVLSV DSCNVYLTRL SKDCYKTATA IIVFREFPEV
GVCWNVASYN IVIHFVCQLG RIKEAHHLLL LMELKGYTPD VISYSTVVNG YCRFGELDKV
WKLIEVMKRK GLKPNSYIYG SIIGLLCRIC KLAEAEEAFS EMIRQGILPD TVVYTTLIDG
FCKRGDIRAA SKFFYEMHSR DITPDVLTYT AIISGFCQIG DMVEAGKLFH EMFCKGLEPD
SVTFTELING YCKAGHMKDA FRVHNHMIQA GCSPNVVTYT TLIDGLCKEG DLDSANELLH
EMWKIGLQPN IFTYNSIVNG LCKSGNIEEA VKLVGEFEAA GLNADTVTYT TLMDAYCKSG
EMDKAQEILK EMLGKGLQPT IVTFNVLMNG FCLHGMLEDG EKLLNWMLAK GIAPNATTFN
SLVKQYCIRN NLKAATAIYK DMCSRGVGPD GKTYENLVKG HCKARNMKEA WFLFQEMKGK
GFSVSVSTYS VLIKGFLKRK KFLEAREVFD QMRREGLAAD KEIFDFFSDT KYKGKRPDTI
VDPIDEIIEN YLVDEQLRGA N
