PPR13_ARATH
ID PPR13_ARATH Reviewed; 500 AA.
AC Q9MA50;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 115.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g05750, chloroplastic;
DE AltName: Full=Protein PIGMENT DEFECTIVE 247;
DE Flags: Precursor;
GN Name=PDE247; Synonyms=PCMP-E59; OrderedLocusNames=At1g05750;
GN ORFNames=T20M3.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC009999; AAF29381.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE27887.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM60431.1; -; Genomic_DNA.
DR EMBL; AK221614; BAD95203.1; -; mRNA.
DR PIR; H86191; H86191.
DR RefSeq; NP_001322717.1; NM_001331574.1.
DR RefSeq; NP_172066.3; NM_100455.3.
DR AlphaFoldDB; Q9MA50; -.
DR SMR; Q9MA50; -.
DR BioGRID; 22325; 2.
DR STRING; 3702.AT1G05750.1; -.
DR PaxDb; Q9MA50; -.
DR PRIDE; Q9MA50; -.
DR ProteomicsDB; 236591; -.
DR EnsemblPlants; AT1G05750.1; AT1G05750.1; AT1G05750.
DR EnsemblPlants; AT1G05750.2; AT1G05750.2; AT1G05750.
DR GeneID; 837083; -.
DR Gramene; AT1G05750.1; AT1G05750.1; AT1G05750.
DR Gramene; AT1G05750.2; AT1G05750.2; AT1G05750.
DR KEGG; ath:AT1G05750; -.
DR Araport; AT1G05750; -.
DR TAIR; locus:2198678; AT1G05750.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_2_1; -.
DR InParanoid; Q9MA50; -.
DR OMA; WFREMQL; -.
DR OrthoDB; 1344243at2759; -.
DR PhylomeDB; Q9MA50; -.
DR PRO; PR:Q9MA50; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9MA50; baseline and differential.
DR Genevisible; Q9MA50; AT.
DR GO; GO:0009507; C:chloroplast; IDA:TAIR.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IMP:TAIR.
DR Gene3D; 1.25.40.10; -; 4.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 3.
DR TIGRFAMs; TIGR00756; PPR; 6.
DR PROSITE; PS51375; PPR; 9.
PE 2: Evidence at transcript level;
KW Chloroplast; Plastid; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..54
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 55..500
FT /note="Pentatricopeptide repeat-containing protein
FT At1g05750, chloroplastic"
FT /id="PRO_0000342754"
FT REPEAT 35..69
FT /note="PPR 1"
FT REPEAT 70..106
FT /note="PPR 2"
FT REPEAT 108..138
FT /note="PPR 3"
FT REPEAT 139..173
FT /note="PPR 4"
FT REPEAT 174..204
FT /note="PPR 5"
FT REPEAT 205..239
FT /note="PPR 6"
FT REPEAT 240..270
FT /note="PPR 7"
FT REPEAT 271..305
FT /note="PPR 8"
FT REPEAT 306..336
FT /note="PPR 9"
FT REPEAT 342..376
FT /note="PPR 10"
FT REGION 377..453
FT /note="Type E motif"
FT REGION 454..484
FT /note="Type E(+) motif"
SQ SEQUENCE 500 AA; 55778 MW; 2DEEB0F79BDA33D2 CRC64;
MGLLPVVGIT SPALITHKNH ANPKIQRHNQ STSETTVSWT SRINLLTRNG RLAEAAKEFS
DMTLAGVEPN HITFIALLSG CGDFTSGSEA LGDLLHGYAC KLGLDRNHVM VGTAIIGMYS
KRGRFKKARL VFDYMEDKNS VTWNTMIDGY MRSGQVDNAA KMFDKMPERD LISWTAMING
FVKKGYQEEA LLWFREMQIS GVKPDYVAII AALNACTNLG ALSFGLWVHR YVLSQDFKNN
VRVSNSLIDL YCRCGCVEFA RQVFYNMEKR TVVSWNSVIV GFAANGNAHE SLVYFRKMQE
KGFKPDAVTF TGALTACSHV GLVEEGLRYF QIMKCDYRIS PRIEHYGCLV DLYSRAGRLE
DALKLVQSMP MKPNEVVIGS LLAACSNHGN NIVLAERLMK HLTDLNVKSH SNYVILSNMY
AADGKWEGAS KMRRKMKGLG LKKQPGFSSI EIDDCMHVFM AGDNAHVETT YIREVLELIS
SDLRLQGCVV ETLAGDLLNA
